Table 2.
Significantly regulated biological processes in the analyzed transcriptomic studies (FDR < 0.05).
| Biological Process | |||||||
|---|---|---|---|---|---|---|---|
| Group | Up/Down | GO ID | GO term | Count | p-val | Fold enrichment | FDR |
| Fungal pathogens | Down | GO:0006355 | Regulation of transcription, DNA-templated | 90 | 1.95E-05 | 1.555852518 | 1.69E-03 |
| Down | GO:0015979 | Photosynthesis | 15 | 2.49E-05 | 3.981704692 | 3.79E-02 | |
| Down | GO:0007018 | Microtubule-based movement | 12 | 1.11E-06 | 6.868440594 | 3.79E-02 | |
| Tree architecture | Up | GO:0055114 | Oxidation-reduction process | 64 | 1.46E-05 | 1.752317802 | 2.97E-02 |
| Down | GO:0006511 | Ubiquitin-dependent protein catabolic process | 50 | 3.99E-08 | 2.312224705 | 1.65E-03 | |
| Down | GO:0006886 | Intracellular protein transport | 40 | 9.92E-07 | 2.319412969 | 6.99E-03 | |
| Down | GO:0042254 | Ribosome biogenesis | 31 | 6.76E-06 | 2.443142217 | 1.56E-02 | |
| Down | GO:0000027 | Ribosomal large subunit assembly | 14 | 4.95E-06 | 4.47646703 | 0.0073212 | |
| Down | GO:0000059 | Protein import into nucleus, docking | 11 | 4.41E-06 | 5.862040158 | 6.62E-05 | |
| Down | GO:0018279 | Protein N-linked glycosylation via asparagine | 8 | 4.21E-06 | 8.952934059 | 1.12E-02 | |
| Up | GO:0015996 | Chlorophyll catabolic process | 6 | 1.02E-05 | 18.20767717 | 2.22E-02 | |
| Root | Down | GO:0009734 | Auxin-activated signaling pathway | 11 | 1.31E-08 | 12.74993734 | 1.09E-02 |
| Up | GO:0009734 | Auxin-activated signaling pathway | 9 | 8.24E-06 | 8.762684211 | 8.22E-03 | |
| Down | GO:0007169 | Transmembrane receptor protein tyrosine kinase signaling pathway | 8 | 1.92E-06 | 13.55238095 | 1.62E-05 | |
Only those studies with at least an affected biological process were indicated.