Fig 8. Clover scores and ChIP-seq counts for TF when motif is not over represented.

An example of observed counts (pane A) and predicted scores (pane B) for TF whose motif was not found to be over represented. Top graph shows normalized counts for IRF1 within the HAc-valley regulatory elements of genes in UC1 (purple line), or within 10kb region centered at TSS for the same genes (green line). Graph below shows predicted binding of those IRF1 as represented by Clover raw scores (red line) superimposed on the UC1 cluster median fold change (blue line).