Table 1.
Summary of plastid RNA edits in Phalaenopsis orchid
Leaf | Flower | Commona | Total | Reportedb | |
---|---|---|---|---|---|
Protein coding transcripts | 67 | 69 | 57 | 79 | 43 |
1st codon position | 9 | 10 | 7 | 12 | 4 |
2nd codon position | 47 | 51 | 43 | 55 | 39 |
3rd codon position | 11 | 8 | 7 | 12 | 0 |
Creation of start codon | 2 | 2 | 1 | 3 | 1 |
Creation of stop codon | 4 | 5 | 3 | 6 | 0 |
Nonsynonymous substitution | 50 | 54 | 46 | 58 | 42 |
Synonymous substitution | 11 | 8 | 7 | 12 | 1 |
Non-protein coding transcripts | 43 | 37 | 22 | 58 | 1 |
tRNA | 1 | 1 | 1 | 1 | 0 |
rRNA | 0 | 0 | 0 | 0 | 0 |
Intron | 4 | 6 | 2 | 8 | 0 |
Intergenic spacer (IGS) | 38 | 30 | 19 | 49 | 1 |
Total | 110 | 106 | 79 | 137 | 44 |
aCommon RNA edits in both leaf and floral with editing status >5%
bPreviously reported in Zeng et al. (2007)