Skip to main content
. 2017 Sep 16;12:56. doi: 10.1186/s40793-017-0269-8

Table 6.

Antibiotic genes prediction

E. meningoseptica E. anophelis E. miricola
Locus number Gene in Em3 Putative function Em3 502 R26 NUHP1 ATCC 33958 EM_CHUV
β-lactam
BFF93_RS01220 bla GOB-13 Class B carbapenemase BlaGOB-13 + + + + + +
BFF93_RS04805 – β-lactamase + + + + + +
BFF93_RS05700 – β-lactamase (EC 3.5.2.6) + + + + + +
BFF93_RS07625 bla ACME β-lactamase (BlaACME) VEB-1-like + + + + + +
BFF93_RS06860 bla B BJP β-lactamase + + + + + +
BFF93_RS09265 – MBL fold metallo-hydrolase + + + + + +
BFF93_RS06995 – β-lactamase (EC 3.5.2.6) + + + + + +
BFF93_RS14540 – β-lactamase + + + + – +
BFF93_RS12085 – β-lactamase (EC 3.5.2.6) + + + + + +
BFF93_RS12510 – MBL fold metallo-hydrolase + + + + + +
BFF93_RS14000 blaB-9 Class B carbapenemase BlaB-9 + + + + + +
BFF93_RS01365 – β-lactamase (EC 3.5.2.6) + + + + + +
Sulfonamide
BFF93_RS00125 dhfR Dihydrofolate reductase DHFR + + + + + +
BFF93_RS17395 – Bifunctional deaminase-reductase + + + + + +
BFF93_RS00125 dhfR Dihydrofolate reductase DHFR + + + + + +
BFF93_RS17395 – Bifunctional deaminase-reductase protein + + + + + +
BFF93_RS14765 folP Dihydropteroate synthase FolP (EC 2.5.1.15) + + + + + +
Tetracycline
BFF93_RS08380 tetA Tetracycline efflux protein TetA + + + + + +
BFF93_RS07335 – Transmembrane efflux protein + + + + + +
BFF93_RS12745 – Antibiotic transporter + + + + + +
Macrolide
BFF93_RS00370 lolD Macrolide resistance, ABC transporter + + + + + +
BFF93_RS05670 emrB Erythromycin resistance, EmrB/QacA + + – – + +
BFF93_RS05670 emrB Erythromycin resistance, EmrB/QacA + + + + + +
BFF93_RS10830 emrB Erythromycin resistance, EmrB/QacA + + + + + +
BFF93_RS03320 – Erythromycin esterase + + + + + +
Quinolone
BFF93_RS04670 gyrA DNA gyrase GyrA subunit A (T83S) + + + + + +
BFF93_RS09245 gyrB DNA gyrase GyrB subunit A (M437 L) + + + + + +
BFF93_RS08895 parE DNA topoisomerase IV subunit B (M437F/A473L) + + + + + +
Aminoglycoside
BFF93_RS10790 ant-6 Aminoglycoside 6-adenylyltransferase + + + + + +
Chloramphenicol
BFF93_RS14765 catB Chloramphenicol acetyltransferase CatB + + + + + +
BFF93_RS04080 bcr/cflA Bcr/CflA efflux pump + + + + + +

“+” or “-” indicates the presence or absence of genes in the selected Elizabethkingia