Table 1.
bZIP transcription factor probesets and the respective co-expressed gene clusters of maturing seeds in AC Domain and RL4452a
| Probeset ID | AC Domain | RL4452 | Arabidopsis | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Aem | Aen | Amn | Rem | Ren | Rmn | AGI ID | E-Value | Gene name | |
| Ta.808.1.S1_at | Aem16 | Aen14 | Amn4 | Rem13 | Ren9 | Rmn1 | AT5G06950.4 | 1E-104 | AHBP-1B |
| Ta.161.1.S1_at | Aem1 | Aen4 | Amn12 | Rem1 | Ren2 | Rmn13 | AT2G35530.1 | 6E-72 | bZIP transcription factor family protein |
| Ta.10054.1.S1_at | Aem10 | Aen9 | Amn10 | Rem12 | Ren15 | Rmn10 | AT2G36270.1 | 8E-55 | ABI5 (ABA INSENSITIVE 5) |
| Ta.23671.1.S1_x_at | Aem10 | Aen10 | Amn16 | Rem12 | Ren12 | Rmn15 | AT2G36270.1 | 1E-44 | ABI5 (ABA INSENSITIVE 5) |
| Ta.29331.1.S1_a_at | Aem1 | Aen2 | Amn12 | Rem1 | Ren2 | Rmn8 | AT3G56850.1 | 8E-29 | AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3) |
| Ta.29331.1.S1_at | Aem1 | Aen2 | Amn1 | Rem1 | Ren16 | Rmn1 | AT3G56850.1 | 8E-29 | AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3) |
| Ta.5410.1.S1_at | Aem15 | Aen8 | Amn10 | Rem12 | Ren15 | Rmn10 | AT5G06950.4 | 1E-135 | AHBP-1B |
| Ta.1612.1.S1_at | Aem1 | Aen14 | Amn1 | Rem7 | Ren7 | Rmn3 | AT2G35530.1 | 2E-68 | bZIP transcription factor family protein |
| Ta.23670.1.A1_at | NAb | NA | NA | NA | NA | NA | AT5G06950.4 | 1E-133 | AHBP-1B |
| Ta.4604.1.S1_at | Aem1 | Aen13 | Amn1 | Rem1 | Ren6 | Rmn1 | AT1G06850.1 | 3E-47 | AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52) |
| Ta.6518.1.S1_at | Aem1 | Aen14 | Amn6 | Rem1 | Ren17 | Rmn7 | AT4G38900.3 | 2E-80 | bZIP protein |
| TaAffx.24695.1.S1_at | Aem15 | Aen2 | Amn7 | Rem6 | Ren3 | Rmn8 | AT5G24800.1 | 5E-35 | BZIP9 (BASIC LEUCINE ZIPPER 9) |
| TaAffx.88821.1.S1_at | Aem15 | Aen9 | Amn13 | Rem13 | Ren13 | Rmn11 | AT5G06950.4 | 1E-101 | AHBP-1B |
| Ta.100.1.S1_at | Aem10 | Aen10 | Amn5 | Rem9 | Ren12 | Rmn4 | AT4G36730.1 | 1E-35 | GBF1 |
| Ta.13267.1.S1_at | NA | NA | NA | Rem10 | NA | Rmn5 | AT4G35040.1 | 1E-43 | bZIP transcription factor family protein |
| Ta.13357.2.S1_at | Aem6 | Aen1 | Amn2 | Rem5 | Ren16 | Rmn2 | AT2G46270.1 | 6E-48 | GBF3 (G-BOX BINDING FACTOR 3) |
| Ta.140.1.S1_at | Aem5 | Aen11 | Amn16 | Rem5 | Ren7 | Rmn14 | AT4G36730.1 | 3E-27 | GBF1 |
| Ta.19597.1.S1_at | Aem14 | Aen8 | Amn16 | Rem12 | Ren9 | Rmn10 | AT1G45249.1 | 1E-35 | ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2) |
| Ta.19597.1.S1_x_at | Aem14 | Aen10 | Amn10 | Rem14 | Ren18 | Rmn12 | AT1G45249.1 | 1E-35 | ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2) |
| Ta.23670.1.S1_at | Aem1 | NA | Amn6 | Rem1 | NA | Rmn1 | AT5G06950.4 | 1E-133 | AHBP-1B |
| Ta.25454.1.S1_at | Aem1 | NA | Amn1 | Rem2 | NA | Rmn2 | AT2G42380.2 | 1E-49 | bZIP transcription factor family protein |
| Ta.28910.1.S1_s_at | Aem3 | Aen4 | Amn2 | Rem7 | Ren6 | Rmn3 | AT2G35530.1 | 2E-64 | bZIP transcription factor family protein |
| Ta.6443.2.S1_at | Aem8 | Aen12 | Amn3 | Rem7 | Ren13 | Rmn15 | AT2G40950.1 | 7E-62 | BZIP17 |
| Ta.6919.1.S1_at | Aem11 | Aen9 | Amn13 | Rem9 | Ren13 | Rmn4 | AT1G58110.2 | 6E-60 | bZIP family transcription factor |
| Ta.893.1.S1_at | NA | Aen2 | Amn8 | NA | Ren3 | Rmn8 | AT5G28770.1 | 1E-30 | BZO2H3 |
aThe amino acid sequences of the wheat transcription factors available in the Plant Transcription Factor database (PlantTFDB 3.0) were searched against the wheat microarray platform in the Plant Expression Database (PLEXdb) to identify the respective probeset (<e−100)
b NA not expressed in either or both tissues as determined by MAS5.0. Bold italicized clusters represent clusters enriched with ABRE motifs