Table 4.
QTL for sharp eyespot resistance in the CI12633/ Yangmai 9 224 RIL population across five environments.
| QTLa | Marker interval | Position | F2014b | F2015 | F2016 | GH2015 | GH2016 | Average | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LODc | R2d | Adde | LOD | R2 | Add | LOD | R2 | Add | LOD | R2 | Add | LOD | R2 | Add | LOD | R2 | Add | ||||
| QSe.jaas-2BS | RAC875_c730_234 | RAC875_c16697_1502 | 298.21–355.41 | 12.0 | 20.7 | 5.0 | 11.0 | 27.7 | 4.8 | 9.9 | 22.2 | 7.4 | 14.6 | 27.9 | 5.2 | ||||||
| QSe.jaas-4BS | RAC875_c49792_228 | Kukri_c34353_821 | 771.6 | 11.5 | 32.2 | 7.5 | 12.5 | 37.7 | 7.0 | ||||||||||||
| QSe.jaas-5AL.1 | GENE-3601_145 | Ku_c21002_908 | 767.2 | 4.3 | 8.3 | −3.6 | 6.2 | 10.6 | −3.6 | 6.2 | 14.7 | −4.3 | 5.1 | 13.1 | −4.5 | ||||||
| QSe.jaas-5AL.2 | IAAV3043 | wsnp_Ex_c55777_58153636 | 774.5 | 3.0 | 5.8 | −3.0 | 4.4 | 7.8 | −3.1 | 4.6 | 11.3 | −3.8 | 3.9 | 9.1 | −3.9 | ||||||
| QSe.jaas-5BS | wsnp_Ku_c11721_19085513 | BS00068710_51 | 584.41–695.51 | 3.1 | 6.2 | −3.2 | 3.0 | 5.2 | −2.9 | 3.7 | 7.1 | −2.9 | |||||||||
aQTL were detected with a LOD threshold of 3.0 for declaring significance based on 2000 permutations at P = 0.01; bF2014, evaluated in field during the 2013–2014 cropping season; F2015, evaluated in field during the 2014–2015 cropping season; F2016, evaluated in field during the 2015–2016 cropping season; GH2015, evaluated in greenhouse during the 2014–2015 cropping season; GH2016, evaluated in greenhouse during the 2015–2016 cropping season; Average, averaged data across five environments; cLOD score; dPercentage of phenotypic variation explained by the QTL; eAdditive effect of resistance alleles.