Table S1.

RNA-seq and DNA-seq data generated in this study

Strain	Stage	Sample	Library	Read, bp	Total reads	Mapped reads	Unduplicated reads
N. crassa FGSC2489	Hyphae 48 h	FGSC2489	DNA-seq	101	37,849,444	37,716,733	37,499,966
N. crassa FGSC4200	Hyphae 48 h	FGSC4200	DNA-seq	101	54,108,680	53,827,878	53,440,667
N. crassa FGSC2489 × FGSC4200	Perithecia 3 dpf	P3_1	Strand-specific RNA-seq	150	27,268,842	25,996,890	17,200,513
N. crassa FGSC2489 × FGSC4200	Perithecia 3 dpf	P3_2	Strand-specific RNA-seq	150	32,547,894	30,300,681	20,030,570
N. crassa FGSC2489 × FGSC4200	Perithecia 4 dpf	P4_1	Strand-specific RNA-seq	150	35,493,218	30,109,571	17,610,563
N. crassa FGSC2489 × FGSC4200	Perithecia 4 dpf	P4_2	Strand-specific RNA-seq	150	37,578,848	34,035,599	20,644,751
N. crassa FGSC2489 × FGSC4200	Perithecia 5 dpf	P5_1	Strand-specific RNA-seq	150	35,751,232	32,724,442	21,075,858
N. crassa FGSC2489 × FGSC4200	Perithecia 5 dpf	P5_2	Strand-specific RNA-seq	150	28,450,946	26,117,987	18,585,188
N. crassa FGSC2489 × FGSC4200	Perithecia 6 dpf	P6_1	Strand-specific RNA-seq	150	36,844,012	34,871,471	23,259,139
N. crassa FGSC2489 × FGSC4200	Perithecia 6 dpf	P6_2	Strand-specific RNA-seq	150	32,861,106	30,345,011	21,362,699
N. crassa FGSC11152 × FGSC11151	Perithecia 5 dpf	Δsad-1_1	Strand-specific RNA-seq	150	29,682,994	28,042,537	19,011,359
N. crassa FGSC11152 × FGSC11151	Perithecia 5 dpf	Δsad-1_2	Strand-specific RNA-seq	150	36,877,166	33,066,716	21,404,444
N. crassa FGSC17465 × FGSC17464	Perithecia 5 dpf	Δstc-1_1	Strand-specific RNA-seq	150	29,836,114	28,521,674	19,378,626
N. crassa FGSC17465 × FGSC17464	Perithecia 5 dpf	Δstc-1_2	Strand-specific RNA-seq	150	26,772,608	25,910,706	17,395,558
N. crassa FGSC2489	Hyphae 48 h	Hy2489_1	Strand-specific RNA-seq	150	32,130,828	31,338,489	21,821,285
N. crassa FGSC2489	Hyphae 48 h	Hy2489_2	Strand-specific RNA-seq	150	38,420,138	37,548,932	24,998,664
N. tetrasperma FGSC2508 × FGSC2509	Perithecia 6 dpf	NtP6	DNA-seq	150	32,926,194	29,088,487	26,258,514
N. tetrasperma FGSC2508 × FGSC2509	Perithecia 6 dpf	NtP6	Strand-specific RNA-seq	150	60,105,658	53,153,633	50,323,660