Table 1.
Number of features | Feature combinationa | phi | psi | avgb |
---|---|---|---|---|
1 | PSSM | 23.28 | 35.12 | 29.2 |
8-state secondary structure (8stateSS) | 25.12 | 33.52 | 29.32 | |
Contacts_number_15_classes (CN15) | 25.58 | 37.26 | 31.42 | |
Error_distribution_of_fragment_based_angles (fragsion) | 24.24 | 40 | 32.12 | |
3-state secondary structure (3SS) | 25.8 | 38.95 | 32.38 | |
Contacts_number_1_real_value (CN1) | 26.92 | 44.71 | 35.82 | |
7 physicochemical properties (7PC) | 27.27 | 52.18 | 39.73 | |
Solvent_accessibility (SA) | 29.15 | 53.84 | 41.5 | |
Disorder | 30.8 | 64.69 | 47.75 | |
2 | PSSM_8stateSS | 22.18 | 30.73 | 26.46 |
PSSM_CN15 | 22.41 | 33.14 | 27.78 | |
PSSM_Fragsion | 22.19 | 34.29 | 28.24 | |
PSSM_7PC | 22.42 | 35.75 | 29.09 | |
PSSM_DISORDER | 22.96 | 35.23 | 29.1 | |
PSSM_SA | 23.47 | 35.53 | 29.5 | |
3 | PSSM_8stateSS_7PC | 21.48 | 30.36 | 25.92 |
PSSM_8stateSS_Fragsion | 21.63 | 30.72 | 26.18 | |
PSSM_8stateSS_CN15 | 21.99 | 30.12 | 26.06 | |
PSSM_SS8_Disorder | 22.91 | 31.08 | 27 | |
PSSM_8stateSS_SA | 23.09 | 31.41 | 27.25 | |
4 | PSSM_8stateSS_7PC_CN15 | 21.48 | 30.27 | 25.88 |
PSSM_8stateSS_7PC_SA | 21.88 | 30.89 | 26.39 | |
PSSM_8stateSS_7PC_Disorder | 22.17 | 30.97 | 26.57 | |
PSSM_8stateSS_7PC_Fragsion | 22.08 | 31.11 | 26.595 | |
5 | PSSM_8stateSS_7PC_CN15_Disorder | 21.54 | 29.94 | 25.74 |
PSSM_8stateSS_7PC_CN15_SA | 21.93 | 30.39 | 26.16 | |
PSSM_8stateSS_7PC_CN15_Fragsion | 21.81 | 30.83 | 26.32 | |
6 | PSSM_8stateSS_7PC_CN15_Disorder_Fragsion | 21.11 | 30.33 | 25.72 |
PSSM_8stateSS_7PC_CN15_Disorder_SA | 22.24 | 30.60 | 26.42 | |
7 | PSSM_8stateSS_7PC_CN15_Disorder_Fragsion_SA | 21.36 | 29.83 | 25.6 |
aFeatures combination: for example “PSSM_8stateSS” represent the combination of PSSM and 8-state secondary structure as input features. The bold font denotes the best combination selected for a specific number of features in terms of the average MAE of phi and psi angles
bavg.: Average of phi and psi values for each features combination