Table 1.
Mitochondrial genome lengths and intron presence. The strains of clades 2 and 3 are ordered based on the corrected mitochondrial genome length
| Strain | Species | forma specialis | Clade | Introns | LV | mt length | Correcteda | |||
|---|---|---|---|---|---|---|---|---|---|---|
| nad5 | cob(1) | cob(2) | atp6 | variant | (bp) | (bp) | ||||
| Foc011 | F. oxysporum | f.sp. cucumerinum | 1 | yes | yes | - | - | 1 | 46476 | 33615 |
| Foc013 | F. oxysporum | f.sp. cucumerinum | 1 | yes | yes | - | - | 1 | 46476 | 33615 |
| Fov24500 | F. oxysporum | f.sp. vasinfectum | 1 | yes | yes | yes | yes | 1 | 48054 | 33727 |
| B2 | F. oxysporum | f.sp. cubense | 1 | yes | yes | yes | yes | 1 | 49697 | 33419 |
| II5 | F. oxysporum | f.sp. cubense | 1 | yes | yes | yes | yes | 1 | 49692 | 33414 |
| Foc021 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 2 | 50783 | 33449 |
| Foc018 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 2 | 50783 | 33449 |
| Foc030 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 2 | 50783 | 33449 |
| NRRL25433 | F. oxysporum | f.sp. vasinfectum | 2 | yes | - | - | - | 1 | 44941 | 33458 |
| N2 | F. oxysporum | f.sp. cubense | 2 | yes | - | - | - | 1 | 45639 | 33465 |
| Foc035 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 1 | 45706 | 33477 |
| Fon002 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 1 | 45677 | 33477 |
| Foc037 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 1 | 45705 | 33479 |
| Foc015 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 1 | 45712 | 33486 |
| Fom016 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 1 | 45538 | 33487 |
| Fom013 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 1 | 45538 | 33487 |
| Fom005 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 1 | 45538 | 33487 |
| Fom012 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 1 | 45538 | 33487 |
| NRRL54005 | F. oxysporum | f.sp. raphani | 2 | yes | - | - | - | 1 | 45536 | 33487 |
| Fom004 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 1 | 45538 | 33487 |
| Fom006 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 1 | 45538 | 33487 |
| NRRL37622 | F. oxysporum | f.sp. pisi | 2 | yes | - | - | - | 3 | 39941 | 33490 |
| Fom009 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 3 | 38736 | 33492 |
| Fom011 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 3 | 38736 | 33492 |
| Fom010 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 3 | 38736 | 33492 |
| Fod008 | F. oxysporum | f.sp. dianthi | 2 | yes | - | - | - | 1 | 45694 | 33498 |
| Fod001 | F. oxysporum | f.sp. dianthi | 2 | yes | - | - | - | 1 | 44947 | 33498 |
| Foc001 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 1 | 45741 | 33509 |
| Fon015 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 1 | 45708 | 33514 |
| Fon019 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 2 | 50087 | 33514 |
| Fon020 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 1 | 45752 | 33526 |
| Fon005 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 1 | 45752 | 33526 |
| Fon010 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 1 | 45752 | 33526 |
| Fon021 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 1 | 45752 | 33526 |
| Fon013 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 2 | 50795 | 33527 |
| NRRL54008 | F. oxysporum | f.sp. conglutinans | 2 | yes | - | - | - | 2 | 50023 | 33534 |
| Forc031 | F. oxysporum | f.sp. radicis-cucumerinum | 3 | yes | yes | - | - | 1 | 47541 | 33667 |
| DF023 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52324 | 33667 |
| Fo47 | F. oxysporum | 3 | yes | yes | - | - | 1 | 47547 | 33667 | |
| Forc024 | F. oxysporum | f.sp. radicis-cucumerinum | 3 | yes | yes | - | - | 1 | 47541 | 33667 |
| Forc016 | F. oxysporum | f.sp. radicis-cucumerinum | 3 | yes | yes | - | - | 1 | 47541 | 33667 |
| NRRL54003 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 1 | 47588 | 33674 |
| UASWS AC1 | F. oxysporum | 3 | yes | yes | - | - | 1 | 47598 | 33682 | |
| DF038 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 1 | 47562 | 33688 |
| DF062 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 1 | 47562 | 33688 |
| Fol016 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 1 | 47562 | 33688 |
| NRRL26406 | F. oxysporum | f.sp. melonis | 3 | yes | yes | - | - | 1 | 47444 | 33688 |
| Fol004 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
| Fol014 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
| Fol4287 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
| Fol038 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
| DF041 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
| Fol018 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
| Fol002 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
| Fol026 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
| DF040 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
| Fol029 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
| MN14 | F. oxysporum | 3 | yes | yes | - | - | 1 | 47573 | 33696 | |
| F11 | F. oxysporum | f.sp. cumini | 3 | yes | yes | - | - | 1 | 47409 | 33704 |
| NRRL26381 | F. oxysporum | f.sp. radicis-lycopersici | 3 | yes | yes | - | - | 1 | 47263 | 33707 |
| FOSC3-a | F. oxysporum | 3 | yes | yes | yes | - | 2 | 53639 | 33727 | |
| JCM11502 | F. commune | - | yes | - | - | - | 1 | 47526 | 33565 | |
| ITEM2287 | F. proliferatum | - | - | - | - | - | 1 | 46555 | 33558 | |
| ITEM2400 | F. proliferatum | - | - | - | - | - | 1 | 46549 | 33549 | |
aThe length of the conserved part of the mitogenome after excluding the introns of protein coding genes