Table 1.
Overview of Illumina Hiseq 2500 sequence data
| Musa acuminata genotype | cDNA library | High quality reads (Q30)* | Reads mapped to Musa acuminata reference genome (%) | |
|---|---|---|---|---|
| Bioassay 1 | ||||
| CAV | Uninfected roots 3 DAI | 16 769 217 | 97·55% | |
| Uninfected roots 7 DAI | 23 209 664 | 98·03% | ||
| Uninfected roots 10 DAI | 8 696 880 | 97·57% | ||
| M. incognita-infected roots 3 DAI | 20 073 517 | 97·57% | ||
| M. incognita-infected roots 7 DAI | 14 708 226 | 97·75% | ||
| M. incognita-infected roots 10 DAI | 17 827 098 | 97·87% | ||
| 4279-06 | Uninfected roots 3 DAI | 26 583 657 | 97·30% | |
| Uninfected roots 7 DAI | 20 175 582 | 97·67% | ||
| Uninfected roots 10 DAI | 10 800 357 | 97·74% | ||
| M. incognita-infected roots 3 DAI | 15 023 526 | 97·84% | ||
| M. incognita-infected roots 7 DAI | 15 475 299 | 97·94% | ||
| M. incognita-infected roots 10 DAI | 14 907 813 | 98·03% | ||
| Total | 204 250 836 | |||
| Bioassay 2 | ||||
| CAV | Uninfected roots 3 DAI | 26 551 739 | 97·78% | |
| Uninfected roots 7 DAI | 14 064 646 | 97·72% | ||
| Uninfected roots 10 DAI | 12 970 992 | 97·45% | ||
| M. incognita-infected roots 3 DAI | 16 667 993 | 97·74% | ||
| M. incognita-infected roots 7 DAI | 12 960 975 | 98·05% | ||
| M. incognita-infected roots 10 DAI | 10 552 389 | 97·79% | ||
| 4279-06 | Uninfected roots 3 DAI | 9 835 864 | 98·00% | |
| Uninfected roots 7 DAI | 11 447 367 | 97·89% | ||
| Uninfected roots 10 DAI | 8 376 730 | 97·86% | ||
| M. incognita-infected roots 3 DAI | 5 025 640 | 97·79% | ||
| M. incognita-infected roots 7 DAI | 13 795 865 | 97·76% | ||
| M. incognita-infected roots 10 DAI | 12 351 290 | 97·70% | ||
| Total | 154 601 490 | |||
*
(Q30) = 1 in 103 base calling errors.