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. 2017 Feb 15;45(9):5512–5522. doi: 10.1093/nar/gkx110

Table 1. Folding parameters for aptamer docking of wt and apoASTAB obtained by smFRET.

Variant Mg [mM] Ade [μM] ΔG(UD) Hista [kcal/mol] kdockb [s−1] kundockb [s−1] ΔGdockKinc [kcal/mol]
Wt 2 0 0.8 ± 0.1 0.7 ± 0.1 0.98 ± 0.03 0.2 ± 0.1
20 0 0.2 ± 0.1 0.7 ± 0.1 1.18 ± 0.02 0.3 ± 0.1
2 100 0.1 ± 0.1 0.7 ± 0.1 1.5 ± 0.2 0.4 ± 0.1
apoASTAB 2 0 0.5 ± 0.1 0.5 ± 0.1 0.9 ± 0.1 0.3 ± 0.1
20 0 0.2 ± 0.1 0.5 ± 0.1 1.1 ± 0.1 0.5 ± 0.1
2 100 0.0 ± 0.1 0.49 ± 0.04 1.2 ± 0.3 0.5 ± 0.1

aFree enthalpy of the docked state relative to the undocked state determined from the FRET distribution observed in the FRET histogram as ΔG(UD) = –RT*ln(D/U). The reported error was calculated from the fitting errors of the FRET populations by Gaussian error propagation.

bThe reported rate constants are mean values with standard deviations from single-exponentially fitted dwell-time histograms of two independent experiments.

cFree docking enthalpy determined from the observable kinetics as ΔGdock = –RT*ln(kdock/kundock). The reported error was calculated from the standard deviations of the rate constants from two independent experiments by Gaussian error propagation.