Table 2.
COG distribution in the pan genome of nine V. fluvialis strains.
| COG category | Core | Specific | Dispensable | Total |
|---|---|---|---|---|
| INFORMATION STORAGE AND PROCESSING | 532 | 282 | 229 | 1043 |
| [J] Translation, ribosomal structure and biogenesis | 170 | 33 | 25 | 228 |
| [A] RNA processing and modification | 1 | 0 | 0 | 1 |
| [K] Transcription | 253 | 100 | 120 | 473 |
| [L] Replication, recombination and repair | 107 | 149 | 84 | 340 |
| [B] Chromatin structure and dynamics | 1 | 0 | 0 | 1 |
| CELLULAR PROCESSES AND SIGNALING | 781 | 409 | 337 | 1527 |
| [D] Cell cycle control, cell division, chromosome partitioning | 27 | 17 | 8 | 52 |
| [Y] Nuclear structure | 0 | 0 | 0 | 0 |
| [V] Defense mechanisms | 37 | 52 | 46 | 135 |
| [T] Signal transduction mechanisms | 228 | 120 | 94 | 442 |
| [M] Cell wall/membrane/envelope biogenesis | 137 | 89 | 90 | 316 |
| [N] Cell motility | 124 | 43 | 43 | 210 |
| [Z] Cytoskeleton | 0 | 0 | 0 | 0 |
| [W] Extracellular structures | 0 | 0 | 0 | 0 |
| [U] Intracellular trafficking, secretion, and vesicular transport | 98 | 44 | 30 | 172 |
| [O] Posttranslational modification, protein turnover, chaperones | 130 | 44 | 26 | 200 |
| METABOLISM | 1172 | 486 | 398 | 2056 |
| [C] Energy production and conversion | 172 | 88 | 72 | 332 |
| [G] Carbohydrate transport and metabolism | 177 | 104 | 116 | 397 |
| [E] Amino acid transport and metabolism | 278 | 99 | 71 | 448 |
| [F] Nucleotide transport and metabolism | 84 | 28 | 13 | 125 |
| [H] Coenzyme transport and metabolism | 140 | 57 | 34 | 231 |
| [I] Lipid transport and metabolism | 87 | 26 | 27 | 140 |
| [P] Inorganic ion transport and metabolism | 168 | 63 | 52 | 283 |
| [Q] Secondary metabolites biosynthesis, transport and catabolism | 66 | 21 | 13 | 100 |
| POORLY CHARACTERIZED | 1029 | 1770 | 823 | 3622 |
| [R] General function prediction only | 366 | 192 | 126 | 684 |
| [S] Function unknown | 280 | 81 | 85 | 446 |
| [-] Unclassified | 383 | 1497 | 612 | 2492 |