Table 2. Sequences of oligomers and sRNAs.
| RNA or DNA oligomers | Sequences (5’ to 3’) |
|---|---|
| Target | GUGGUCAGUCGAGUGG |
| Target-U6 | GUGGUCAGUCGAGUGGUUUUUU |
| Target-A18 | GUGGUCAGUCGAGUGGAAAAAAAAAAAAAAAAAA |
| A18 | AAAAAAAAAAAAAAAAAA |
| R16 | GCACUUAAAAAAUUCG |
| Molecular beacon | FAM-GGUCCCCCACUCGACUCACCACCGGACC-DABCYL |
| D16-FAM | FAM-CGAAUUUUUUAAGUGC |
| minRCRB | Thiol-C6-CUUCCGUCCAUUUCGGACG |
| DNA1 | TATCCGTATGACGTTCCGGACTATGCGGCTAAGGGGCAATCTTTAC |
| DNA2 | TTTTTCAAACTGCGGATGAGACCACATATGTATATCTCCTTCTTAAAGTTAAAC |
| DNA2c | CAAATTGAAATTCTTCCTCTATATGTATACACCAGAGTAGGCGTCAAACTTTTT |
| Transcribed RNAs | |
|---|---|
| RprA | gggACGGUUAUAAAUCAACAUAUUGAUUUAUAAGCAUGGAAAUC CCCUGAGUGAAACAACGAAUUGCUGUGUGUAGUCUUUGCCCAU CUCCCACGAUGGGCUUUUUUUU |
| DsrA | gggAACACAUCAGAUUUCCUGGUGUAACGAAUUUU UUAAGUGCUUCUUGCUUAAGCAAGUUUCAUCCCGA CCCCCUCAGGGUCGGGAUUUUUUU |
| RyhB | ggGCGAUCAGGAAGACCCUCGAGGAGAACCUGAAAGCA CGACAUUGCUCACAUUGCUUCCAGUAUUACUU AGCCAGCCGGGUGCUGGCUUUUU |
| ChiX | gggACACCGUCGCUUAAAGUGACGGCAUAAUA AUAAAAAAAUGAAAUUCCUCUUUGACGGGC CAAUAGCGAUAUUGGCCAUUUUUUU |
| chiP | GUAGUCAGCGAGACUUUUCUCAACGCUACUU UUUUAAUUUUUAUUUUUUCGCUGUUCACCUUUG GUGCAGCAAUUUAUACGUCAAAGAGG AUUAACCCAUGCGUACGUUUAGUGGC |
| Peptides | |
|---|---|
| CTD-FITC | FITC-Ahx-NNAGGGTSSNYHHGSSAQNTSAQQDSEETE-COOH |
| CTDpos-FITC | FITC-Ahx-NNAGGGTSSNYHHGSSAQNTSAQQRSNKTN-COOH |
| BsCTD-FITC | FITC-Ahx-QLELE-COOH |