Table 5.

QTLs putatively associated with CBSD foliar resistance in ‘Namikonga’ consistently identified using phenotypic data from Chambezi and Naliendele field experiments during seasons 2013 and 2014

QTL	Chromosome	Experiment	Flanking markers (v5.1)		Position (cM)	Parental effects			LOD	Unadjusted PVE (%)
			Left marker	Right marker		F	M	FM
qCBSDRNFc2Nm	II	N1-6	cII:3454303	cII:3552915	22.1–23.7	−0.33	0.31	0.31	17.81	74.39
qCBSDRNFc2Nm	II	C1-3	cII:3454303	cII:3552915	22.1–23.7	0.08	0.08	0.08	8.69	58.52
qCBSDRNFc2Nm	II	C2-3	cII:3454303	cII:3552915	22.1–23.7	−0.13	0.13	0.14	6.05	49.38
qCBSDRNFc2Nm	II	C2-6	cII:3454303	cII:3552915	22.1–23.7	−0.17	0.18	−0.19	3.34	35.54
qCBSDRNFc2Nm	II	N2-3	cII:3454303	cII:3552915	22.1–23.7	0.23	0.28	0.34	3.03	44.65
qCBSDRNFc2Nm	II	N2-6	cII:3454303	cII:3552915	22.1–23.7	−0.33	−0.35	0.35	4.08	45.34
qCBSDRNFc2Nm	II	N2-9	cII:3454303	cII:3552915	22.1–23.7	−0.36	−0.40	0.66	4.50	58.20
qCBSDFc14Nm	XIV	C1-3	cXIV:7870761	cXIV:8305501	31.8–35.7	0.12	0.12	0.11	14.32	58.65
qCBSDFc14Nm	XIV	N1-3	cXIV:7870761	cXIV:8305501	31.8–35.7	−0.26	−0.25	0.26	8.98	45.98
qCBSDFc14Nm	XIV	N1-9	cXIV:7870761	cXIV:8305501	31.8–35.7	−0.29	−0.22	0.30	3.90	31.80
qCBSDFc14Nm	XIV	C1-6	cXIV:7870761	cXIV:8305501	31.8–35.7	−0.32	−0.06	−0.06	3.19	10.40
qCBSDFc14Nm	XIV	C2-6	cXIV:7870761	cXIV:8305501	31.8–35.7	−0.32	−0.06	−0.06	4.77	26.89
qCBSDFc17Nm	XVII	N1-6	cXVII:15341988	cXVII:15982729	46.5–53.8	−0.33	−0.31	0.35	17.98	71.61
qCBSDFc17Nm	XVII	C2-3	cXVII:15341988	cXVII:15982729	46.5–53.8	−0.13	−0.14	0.18	4.13	52.43
qCBSDFc17Nm	XVII	N2-6	cXVII:15341988	cXVII:15982729	46.5–53.8	−0.31	−0.34	0.45	3.94	47.05

SNP marker names are as per Manihot esculenta v5.1 reference genome. Effect F is the estimated additive effect of the female parent (Namikonga). Effect M is the estimated additive effect of the male parent (Albert). Effect FM is the dominance effect between male and female markers

** N1 = Naliendele 2013; N2 = Naliendele 2014; C1 = Chambezi 2013; C2 = Chambezi2014; PVE = % explained variation