Table 6.
QTLs putatively associated with CMD resistance identified using phenotypic data from Chambezi and Naliendele field experiments during seasons 2013 and 2014
| QTL | Chromosome | Experiment | Flanking markers (v5.1) | LOD | Unadjusted PVE (%) | |
|---|---|---|---|---|---|---|
| Left marker | Right marker | |||||
| qCMDc12.1A | XII | N1-9 | cXII:9335575 | cXII:10102374 | 12.68 | 23.84 |
| qCMDc12.1A | XII | C1-3 | cXII:9335575 | cXII:10102374 | 9.39 | 15.00 |
| qCMDc12.1A | XII | N2-3 | cXII:9335575 | cXII:10102374 | 15.92 | 27.01 |
| qCMDc12.1A | XII | C2-9 | cXII:9335575 | cXII:10102374 | 15.29 | 27.33 |
| qCMDc12.1A | XII | C2-6 | cXII:9335575 | cXII:10102374 | 11.90 | 19.01 |
| qCMDc12.2A | XII | C1-6 | cXII:5900335 | cXII:9335575 | 10.95 | 14.32 |
| qCMDc12.2A | XII | N1-3 | cXII:5900335 | cXII:9335575 | 10.83 | 20.38 |
| qCMDc12.2A | XII | N1-6 | cXII:5900335 | cXII:9335575 | 10.32 | 20.61 |
| qCMDc12.2A | XII | N2-6 | cXII:5900335 | cXII:9335575 | 8.20 | 16.32 |
| qCMDc12.2A | XII | N2-9 | cXII:5900335 | cXII:9335575 | 6.03 | 14.04 |
| qCMDc12.2A | XII | C2-3 | cXII:5900335 | cXII:9335575 | 4.90 | 4.46 |
| qCMDc12.3A | XII | C2-3 | cXII:10022137 | cXII:11747091 | 16.00 | 50.37 |
| qCMDc10.1A | X | N2-3 | cX:109425 | cX:690891 | 3.12 | 6.56 |
| qCMDc10.2A | X | C1-9 | cX:1986981 | cX:2500662 | 5.93 | 10.15 |
| qCMDc10.3A | X | N2-6 | cX:8151902 | cX:8859608 | 4.30 | 17.35 |
| qCMDc10.3A | X | N2-9 | cX:8151902 | cX:8859608 | 3.53 | 23.90 |
| qCMDc10.4A | X | C1-3 | cX:8859608 | cX:9048199 | 3.57 | 5.93 |
| qCMDc1.1A | I | N2-9 | cI:12617571 | cI:14956077 | 3.07 | 7.66 |
| qCMDc1.2A | I | N2-9 | cI:15891396 | cI:16140931 | 3.64 | 7.97 |
| qCMDc1.3A | I | C2-9 | cI:16444969 | cI:17133348 | 3.25 | 5.18 |
| qCMDc6A | VI | N2-3 | cVI:14734153 | cVI:18400898 | 4.78 | 19.27 |
| qCMDc6A | VI | N2-6 | cVI:14734153 | cVI:18400898 | 4.25 | 11.22 |
| qCMDc5.1A | V | N1-3 | cV:6374034 | cV:6348932 | 3.70 | 11.17 |
| qCMDc5.1A | V | N2-3 | cV:6374034 | cV:6348932 | 5.39 | 7.60 |
| qCMDc5.2A | V | C2-9 | cV:7989459 | cV:8525487 | 3.11 | 4.44 |
| qCMDc5.3A | V | C1-6 | cV:9268941 | cV:10924271 | 9.71 | 14.05 |
| qCMDc3A | III | C2-6 | cIII:20233083 | cIII:17215597 | 7.92 | 16.33 |
| qCMDc3A | III | C2-9 | cIII:20233083 | cIII:17215597 | 4.10 | 10.67 |
| qCMDc2.1A | II | C2-3 | cII:4722413 | cII:6114475 | 3.68 | 7.03 |
| qCMDc2.2A | II | N2-3 | cII:13956600 | cII:14143547 | 3.41 | 5.47 |
Only QTL on chromosomes that are significant at more than one sampling time or site are given
Information for additional putative QTL is given in Supplementary Note 6
** N1 = Naliendele 2013, N2 = Naliendele 2014, C1 = Chambezi 2013, C2 = Chambezi 2014, -3 = 3MAP, -6 = 6MAP, -9 = 9MAP and PVE = % phenotypic variation explained