Table 7.
Characteristics and position of polymorphic SNPs between Namikonga and Albert within R-genes in the qCBSDRNc11Nm QTL region
| SNP position in bp (v6.1) | Gene | Encoding protein | Genic region | Segregation type | Effect prediction | Predicted effect strength | Predicted change | |
|---|---|---|---|---|---|---|---|---|
| Namikonga | Albert | |||||||
| c11:5574099 | Manes.11G057100 | LRR | CDS | 0/1 | 1/1 | Coding; non-synonymous, missense | Moderate | Ttc±/Ctc; F23L |
| c11:5574320 | Manes.11G057100 | LRR | CDS | 0/1 | 1/1 | Coding; synonymous, silent | Low | gaC/gaT; D96 |
| c11:5574671 | Manes.11G057100 | LRR | CDS | 0/1 | 1/1 | Coding; synonymous, silent | Low | aaA/aaG; K213 |
| c11:5579072 | Manes.11G057200 | LRR NB-ARC | 5′ UTR | 0/1 | 1/1 | Non-coding | – | – |
| c11:5579208 | Manes.11G057200 | LRR NB-ARC | 5′ UTR | 0/1 | 1/1 | Non-coding | – | – |
| c11:5579409 | Manes.11G057200 | LRR NB-ARC | Intron | 0/1 | 1/1 | Non-coding | – | – |
| c11:5579541 | Manes.11G057200 | LRR NB-ARC | Intron | 0/1 | 1/1 | Non-coding | – | – |
| c11:5579630 | Manes.11G057200 | LRR NB-ARC | Intron | 0/1 | 1/1 | Non-coding | – | – |
| c11:5583187 | Manes.11G057200 | LRR NB-ARC | CDS | 1/1 | 0/0 | Coding; Non-synonymous, missense | Moderate | Gat/Aat; D740 N |
| c11:5663225 | Manes.11G058200 | Signal recognition particle | Intron | 0/1 | 1/1 | Non-coding | – | – |