Table 1. Number of SNPs by minor allele frequency bins, as well as the number and percentage of significant SNPs, using several definitions of statistical significance.

MAF bins	<0.001	0.001–0.005	0.005–0.01	0.01–0.05	≥0.05	All
# SNPs	0	0	240,423	2,500,103	6,715,230	9,455,778
(%) of row	0	0	2.54	26.44	71.02	100
P deviated*	0	0	103	1,988	30,417	32,508
(%) of row	0	0	0.32	6.11	93.57	100
P<5x10-8	0	0	0	61	2,152	2,213
(%) of row	0	0	0	2.76	97.24	100
P<1x10-8	0	0	0	39	1,836	1,875
(%) of row	0	0	0	2.08	97.92	100

*P deviated: the p-value was in the tail of the QQ plot, after a point of inflexion where the line sloped away from the line of expectation. This includes all SNPs with p< 0.0074