Table 2. Intrastrain heterogeneity found in TPE Ghana-051 and TPE CDC 2575 genomes.

Minor alleles with a frequency over 8% are shown.

Samoa D (CP002374.1) coordinates	TPE CDC 2575					TPE Ghana-051
	SNV*	Coverage	A	C	G		T	SNV	Coverage	A	C	G	T
			N§ (%)	N (%)	N (%)		N (%)			N (%)	N (%)	N (%)	N (%)
134948	T/C	2855	1	634	1		2219	C/T	2336	0	1234	0	1102
							(77.7)				(52.8)
165819	T/A	147	19	0	0		128	T	822	0	0	0	822
							(87.1)						(100.0)
218783	G	1788	0	0	1788		0	G/T	1259	1	0	1068	190
					(100.0)							(84.8)
235835	A	1830	1830	0	0		0	A/G	3003	2105	1	897	0
			(100.0)							(70.1)
522943	C/T	328	0	258	0		70	C/T	581	0	423	0	158
				(78.7)							(72.8)
623679	A	1007	1007	0	0		0	A/G	1094	983	0	110	1
			(100.0)							(89.9)
653791	A	1905	1905	0	0		0	A/G	13333	10672	3	2642	16
			(100.0)							(80.0)
700634	C/T	1360	0	1058	0		302	T/C	3541	1	1618	1	1921
				(77.8)									(54.3)
821808	A	3070	3070	0	0		0	A/G	2397	2158	0	236	3
			(100.0)							(90.0)
843235	G	165	0	0	165		0	G/C	931	0	167	764	0
					(100.0)							(82.1)
987804	C	2023	0	2023	0		0	C/T	1829	1	1646	0	182
				(100.0)							(90.0)
997894	G/A	5953	2501	1	3449		2	A/G	6334	5010	0	1322	2
					(57.9)					(79.1)
1051146	T	2185	0	0	0		2185	T/C	2812	2	415	0	2395
							(100.0)						(85.2)
1093898	C	2161	0	2161	0		0	C/A	1251	255	996	0	0
				(100.0)							(79.6)

*SNV, single nucleotide variant (major/minor allele); N^§ = number of individual reads