TABLE 1.
Top 25 DEGs for each time point based on log2 fold changes as indicated by Cuffdiff
| DEG and day p.i. | Log2 fold change | q value |
|---|---|---|
| Day 1 | ||
| OGCHI | 6.04088 | 0.0124222 |
| ORM1 | 5.74098 | 0.0199122 |
| MMP7 | 5.59571 | 0.00074413 |
| TAC1 | 5.46247 | 0.0199122 |
| IL13RA2 | 5.40911 | 0.00074413 |
| CA4 | 5.40011 | 0.00074413 |
| OLFM4 | 5.36158 | 0.00074413 |
| AVD | 5.28292 | 0.00074413 |
| NOXO1 | 5.10679 | 0.00792793 |
| TNXB | −5.08516 | 0.0124222 |
| CALCA | 5.0309 | 0.00074413 |
| TLR4 | 4.96328 | 0.00074413 |
| NOX1 | 4.88366 | 0.00074413 |
| CXCL1-like | 4.6884 | 0.00074413 |
| BPI-like | 4.63326 | 0.00074413 |
| MR1-11 | 4.58371 | 0.00074413 |
| EX-FABP | 4.52168 | 0.00074413 |
| IL1R2 | 4.48184 | 0.00243919 |
| ENPP3 | 4.47861 | 0.00074413 |
| LOC428141 | 4.33948 | 0.00074413 |
| TLR15 | 4.3237 | 0.00074413 |
| SOCS3 | 4.3124 | 0.00074413 |
| CSF3R | 4.30121 | 0.00074413 |
| DIO2 | 4.21007 | 0.00074413 |
| CCL4 | 4.19982 | 0.0130504 |
| Day 3 | ||
| MMP7 | 9.22771 | 0.000540175 |
| AVD | 6.35072 | 0.000540175 |
| BPI-like | 5.96431 | 0.000540175 |
| IL13RA2 | 5.81634 | 0.0264145 |
| CCL5 | 5.716 | 0.00216963 |
| IL-8L1 | 5.66709 | 0.000540175 |
| DUOXA1 | 5.5092 | 0.00452629 |
| OLFM4 | 5.33946 | 0.000540175 |
| ENPP3 | 5.31691 | 0.000540175 |
| NOX1 | 5.30958 | 0.000540175 |
| EX-FABP | 5.11639 | 0.000540175 |
| GVIN1 | 5.08679 | 0.000540175 |
| RARRES1 | 4.95679 | 0.000540175 |
| LYG2 | 4.8369 | 0.000540175 |
| CCLI10 | 4.83626 | 0.00356638 |
| TLR4 | 4.70113 | 0.000540175 |
| CXCL1-like | 4.68996 | 0.000540175 |
| TLR15 | 4.67092 | 0.000540175 |
| SEMA3G | 4.63938 | 0.00100296 |
| SOCS3 | 4.60883 | 0.000540175 |
| FAM26F | 4.54028 | 0.013978 |
| CSF3R | 4.52223 | 0.000540175 |
| ENSGALG00000004041 | 4.45456 | 0.000540175 |
| IL4I1 | 4.41317 | 0.000540175 |
| MMP9 | 4.38006 | 0.000540175 |
| Day 5 | ||
| CCL5 | 7.14783 | 0.00272989 |
| MMP9 | 6.95883 | 0.00272989 |
| BPI-like | 6.62699 | 0.00272989 |
| IL-8L1 | 6.42486 | 0.00272989 |
| TLR4 | 6.11835 | 0.0429958 |
| EX-FABP | 5.81914 | 0.00272989 |
| SEMA3G | 5.24163 | 0.024569 |
| CCLI10 | 5.21577 | 0.0174307 |
| IL-1BETA | 5.21417 | 0.00272989 |
| TLR15 | 4.92173 | 0.00272989 |
| LYG2 | 4.90495 | 0.00272989 |
| NOX1 | 4.89579 | 0.00272989 |
| IL4I1 | 4.88468 | 0.0148475 |
| ENPP3 | 4.6874 | 0.00272989 |
| CXCL13L2 | 4.67038 | 0.00272989 |
| ENSGALG00000004159 | 4.62434 | 0.0387631 |
| IL-8L2 | 4.62414 | 0.00272989 |
| IRG1 | 4.58645 | 0.00272989 |
| ENSGALG00000001520 | 4.47759 | 0.0222941 |
| INPPL1 | 4.42783 | 0.0134262 |
| ENSGALG00000002902 | 4.36105 | 0.00272989 |
| LY96 | 4.28532 | 0.00272989 |
| SPP1 | 4.26922 | 0.00272989 |
| SOCS3 | 4.19433 | 0.00272989 |
| CALCA | 4.16685 | 0.00272989 |
| Day 7 | ||
| AVD | 8.65253 | 0.0451375 |
| MMP7 | 7.59615 | 0.00314431 |
| CD72 | 5.86627 | 0.0123263 |
| ENSGALG00000023370 | 5.22307 | 0.0229971 |
| CSF3R | 5.1408 | 0.00314431 |
| BPI-like | 4.99055 | 0.00314431 |
| MMP9 | 4.96884 | 0.00314431 |
| TLR15 | 4.93934 | 0.0271603 |
| CCLI10 | 4.89954 | 0.0142561 |
| CCL5 | 4.57728 | 0.0189036 |
| IL-8L1 | 4.57668 | 0.0159813 |
| IL2RG | 4.46378 | 0.00314431 |
| ENSGALG00000005941 | 4.45204 | 0.00824764 |
| IRF-4 | 4.439 | 0.00314431 |
| ANG | 4.35225 | 0.00314431 |
| CYBB | 4.30937 | 0.00314431 |
| IL1R2 | 4.27765 | 0.00314431 |
| NOX1 | 4.21683 | 0.00314431 |
| K123 | 4.19358 | 0.00314431 |
| ENPP3 | 4.15996 | 0.00314431 |
| ENSGALG00000004041 | 4.11758 | 0.00314431 |
| INPPL1 | 4.02408 | 0.0365979 |
| MGAT5B | 3.99352 | 0.00314431 |
| RGS1 | 3.96458 | 0.00314431 |
| CXORF9 | 3.8988 | 0.00314431 |