Table 3. Families prediction of lncRNAs.
| Family Name | Family Accession | LncRNA | Start | End | E-value | Score | GC% |
|---|---|---|---|---|---|---|---|
| MALAT1 | RF01871 | TCONS_00360963 | 3768 | 3859 | 3.70E-08 | 58.2 | 0.25 |
| MIAT_exon5_2 | RF01876 | TCONS_00194619 | 616 | 700 | 1.20E-20 | 99.5 | 0.54 |
| MIAT_exon5_2 | RF01876 | TCONS_00202016 | 318 | 234 | 1.20E-20 | 99.5 | 0.54 |
| MIAT_exon5_3 | RF01877 | TCONS_00194620 | 170 | 427 | 7.30E-82 | 282.5 | 0.6 |
| MIAT_exon5_3 | RF01877 | TCONS_00194621 | 1 | 62 | 8.70E-17 | 68.9 | 0.48 |
| Xist_exon1 | RF01880 | TCONS_00543946 | 2128 | 2044 | 2.60E-24 | 102.8 | 0.52 |
| BC040587 | RF01884 | TCONS_00164431 | 407 | 269 | 0.00064 | 35.5 | 0.47 |
| Evf1_1 | RF01887 | TCONS_00393382 | 205 | 347 | 2.70E-26 | 133.4 | 0.31 |
| TUG1_3 | RF01891 | TCONS_00194967 | 988 | 1229 | 8.40E-69 | 232.6 | 0.5 |
| TUG1_4 | RF01892 | TCONS_00194967 | 1536 | 1712 | 5.00E-51 | 195.8 | 0.4 |
| CDKN2B | RF01909 | TCONS_00190200 | 432 | 580 | 0.0062 | 29.3 | 0.36 |
| KCNQ1OT1_2 | RF01947 | TCONS_00500370 | 299 | 141 | 0.00042 | 26.5 | 0.65 |
| KCNQ1OT1_2 | RF01947 | TCONS_00512589 | 562 | 720 | 0.00042 | 26.5 | 0.65 |
| KCNQ1OT1_2 | RF01947 | TCONS_00081060 | 183 | 56 | 0.0098 | 22.3 | 0.52 |
| SOX2OT_exon3 | RF01953 | TCONS_00031909 | 362 | 87 | 1.20E-101 | 321.8 | 0.51 |
| SOX2OT_exon3 | RF01953 | TCONS_00048514 | 14 | 289 | 1.20E-101 | 321.8 | 0.51 |
| KCNQ1DN | RF01961 | TCONS_00329408 | 230 | 170 | 0.005 | 35.7 | 0.28 |
| RMST_2 | RF01963 | TCONS_00423556 | 43 | 183 | 5.10E-28 | 125.3 | 0.5 |
| RMST_7 | RF01968 | TCONS_00423569 | 62 | 328 | 1.50E-92 | 310 | 0.34 |
| RMST_10 | RF01971 | TCONS_00423578 | 239 | 388 | 1.50E-26 | 110.4 | 0.51 |
| ZEB2_AS1_1 | RF01984 | TCONS_00247591 | 235 | 361 | 5.30E-36 | 147.2 | 0.49 |
| ZEB2_AS1_1 | RF01984 | TCONS_00232918 | 373 | 247 | 5.30E-36 | 147.2 | 0.49 |
| ZEB2_AS1_1 | RF01984 | TCONS_00274957 | 4175 | 4300 | 0.0056 | 29 | 0.4 |
| ZEB2_AS1_2 | RF01985 | TCONS_00232917 | 826 | 766 | 4.70E-16 | 86.6 | 0.43 |
| DAOA | RF02091 | TCONS_00115217 | 373 | 174 | 4.10E-53 | 183.6 | 0.49 |
| DLEU1_1 | RF02103 | TCONS_00100306 | 7 | 197 | 1.30E-49 | 187.6 | 0.48 |
| DLG2 | RF02112 | TCONS_00357136 | 2081 | 1893 | 6.30E-46 | 195.5 | 0.39 |
| DLG2 | RF02112 | TCONS_00168067 | 201 | 392 | 1.20E-28 | 128.7 | 0.28 |
| DLG2 | RF02113 | TCONS_00357133 | 405 | 216 | 3.70E-39 | 139.3 | 0.55 |
| SMAD5 | RF02174 | TCONS_00052610 | 280 | 178 | 0.0028 | 27.4 | 0.48 |
| SMAD5 | RF02174 | TCONS_00036078 | 362 | 464 | 0.0028 | 27.4 | 0.48 |
| ST7 | RF02179 | TCONS_00410144 | 419 | 479 | 3.70E-06 | 48.9 | 0.34 |
| ST7 | RF02187 | TCONS_00410143 | 198 | 391 | 3.40E-42 | 194.9 | 0.41 |
| ST7 | RF02188 | TCONS_00410143 | 672 | 857 | 1.10E-30 | 135.9 | 0.42 |
| ST7 | RF02189 | TCONS_00410142 | 155 | 323 | 2.60E-21 | 82.4 | 0.44 |
| TCL6_1 | RF02191 | TCONS_00276890 | 1 | 78 | 1.70E-07 | 51 | 0.5 |
| TTC28 | RF02199 | TCONS_00126228 | 291 | 431 | 0.0062 | 36 | 0.37 |
| TTC28 | RF02200 | TCONS_00148497 | 935 | 766 | 0.0022 | 25.8 | 0.48 |
| WT1 | RF02204 | TCONS_00159836 | 411 | 539 | 2.20E-14 | 77.6 | 0.55 |
| WT1 | RF02205 | TCONS_00159836 | 909 | 1143 | 3.30E-53 | 184 | 0.65 |
| WT1 | RF02206 | TCONS_00159836 | 1186 | 1307 | 2.80E-15 | 82.6 | 0.59 |
| WT1 | RF02208 | TCONS_00159836 | 3187 | 3308 | 3.60E-24 | 115 | 0.7 |
| WT1 | RF02209 | TCONS_00159837 | 342 | 635 | 2.50E-106 | 337.5 | 0.47 |
| WT1 | RF02210 | TCONS_00159837 | 733 | 1003 | 1.10E-68 | 264.5 | 0.31 |
| ZNFX1 | RF02215 | TCONS_00123796 | 1 | 59 | 7.70E-08 | 42.4 | 0.68 |
| ZNFX1 | RF02216 | TCONS_00123796 | 179 | 270 | 7.50E-11 | 68.8 | 0.59 |
| Six3os1_2 | RF02247 | TCONS_00114628 | 100 | 283 | 0.0028 | 24.9 | 0.47 |
| Six3os1_2 | RF02247 | TCONS_00349364 | 424 | 247 | 0.007 | 23.6 | 0.48 |
| adapt33_2 | RF02256 | TCONS_00462772 | 583 | 512 | 0.00031 | 39.2 | 0.4 |
| adapt33_2 | RF02256 | TCONS_00462773 | 583 | 512 | 0.00031 | 39.2 | 0.4 |
Note: Family Name, assigned Family name in Rfam database; Family Accession, Correspond Family accession number; LncRNA, long noncoding RNA; Start, start site of the alignment; End, end site of the alignment; E-value, expect value for the alignment; Score, score of the alignment given by Infernal; GC%, GC content of the conserved region; Rank, Rank of this lncRNA in the corresponding family.