Table 8. Our best results of clustering metrics obtained with DAPG (with complexes of minimum size 3).

Network	Algorithm	Complexes	Reference	FMeasure	Acc	MMR
Collins	DAPGU(BFS) rFfN	633
			CYC2008	0.7248	0.7234	0.7183
			SGD	0.6037	0.5409	0.5956
			MIPS	0.5449	0.5417	0.4956
Krogan Core	DAPGU(DFS) rIfN	649
			CYC2008	0.6782	0.6242	0.5059
			SGD	0.6266	0.4519	0.4153
			MIPS	0.4612	0.3793	0.3085
Krogan Extended	DAPGU(DFS) rIfN	830
			CYC2008	0.5411	0.6226	0.4724
			SGD	0.4836	0.4400	0.3662
			MIPS	0.3724	0.3679	0.2747
Gavin	DAPGU(BFS) rIfN	715
			CYC2008	0.6164	0.7135	0.6079
			SGD	0.5188	0.5270	0.4956
			MIPS	0.4376	0.4827	0.4304
DIP-yeast	DAPGUWD(DFS) rIfN	1,925
			CYC2008	0.3830	0.5486	0.4447
			SGD	0.3473	0.4008	0.3620
			MIPS	0.2992	0.3475	0.3607
Biogrid-yeast	DAPGU(Lex) rIfN	4,991
			CYC2008	0.1740	0.5967	0.3845
			SGD	0.1671	0.4627	0.3737
			MIPS	0.1292	0.3925	0.2994
HPRD	DAPGU(BFS) rIfN	2,777
			CORUM	0.3685	0.2119	0.2066
			PCDq	0.3431	0.2992	0.1681
Biogrid-human	DAPGU(DFS) rFfN	7,409
			CORUM	0.2527	0.2917	0.2539
			PCDq	0.1599	0.3495	0.1272