Table 10. Performance comparison results of clustering and biological metrics in Krogan Core.
| Approach | #C | FM | Acc | MMR | GoSim | Coloc. | SC | Time(s) |
|---|---|---|---|---|---|---|---|---|
| Krogan Core | CYC2008 | |||||||
| DAPG | 649 | 0.6782 | 0.6242 | 0.5059 | 0.8976 | 0.7099 | 0.8533 | 2.19 |
| GMFTP | 287 | 0.6079 | 0.7731 | 0.5370 | 0.8524 | 0.6741 | 0.7026 | > 12hrs. |
| ClusterONE | 411 | 0.5844 | 0.7409 | 0.5065 | 0.7937 | 0.6542 | 0.6830 | 1.65 |
| MCL | 377 | 0.4226 | 0.7362 | 0.4119 | 0.6794 | 0.5975 | 0.6072 | 8.62 |
| CFinder | 113 | 0.4719 | 0.5477 | 0.2783 | 0.7203 | 0.5329 | 0.7653 | 0.33 |
| DCAFP | 384 | 0.8494 | 0.5814 | 0.3278 | 0.8587 | 0.7269 | 0.9043 | 640.06 |
| RNSC | 293 | 0.4732 | 0.6951 | 0.4378 | 0.7970 | 0.6818 | 0.6110 | 0.68 |
| MCODE | 83 | 0.4615 | 0.5282 | 0.1829 | 0.7807 | 0.6345 | 0.7271 | 5.68 |
| SPICI | 133 | 0.5714 | 0.6581 | 0.3293 | 0.9076 | 0.7132 | 0.8125 | 0.18 |
| COREPEEL | 723 | 0.6042 | 0.6032 | 0.4869 | 0.8733 | 0.7086 | 0.7869 | 0.24 |
| DSDCluster | 368 | 0.4208 | 0.7044 | 0.4064 | 0.6579 | 0.5667 | 0.5667 | 121.96 |
| SGD | ||||||||
| DAPG | 649 | 0.6266 | 0.4519 | 0.4153 | ||||
| GMFTP | 287 | 0.5536 | 0.5550 | 0.4270 | ||||
| ClusterONE | 411 | 0.5261 | 0.5520 | 0.3833 | ||||
| MCL | 377 | 0.3680 | 0.5336 | 0.2970 | ||||
| CFinder | 113 | 0.4014 | 0.3994 | 0.2051 | ||||
| DCAFP | 384 | 0.7637 | 0.4234 | 0.2842 | ||||
| RNSC | 293 | 0.4340 | 0.5056 | 0.3220 | ||||
| MCODE | 83 | 0.3745 | 0.3950 | 0.1324 | ||||
| SPICI | 133 | 0.5300 | 0.4881 | 0.2604 | ||||
| COREPEEL | 723 | 0.5497 | 0.4406 | 0.3967 | ||||
| DSDCluster | 368 | 0.3804 | 0.5041 | 0.3137 | ||||
| MIPS | ||||||||
| DAPG | 649 | 0.4612 | 0.3793 | 0.3085 | ||||
| GMFTP | 287 | 0.3990 | 0.4597 | 0.3479 | ||||
| ClusterONE | 411 | 0.3443 | 0.4363 | 0.3356 | ||||
| MCL | 377 | 0.2729 | 0.4362 | 0.2681 | ||||
| CFinder | 113 | 0.3030 | 0.3417 | 0.1638 | ||||
| DCAFP | 384 | 0.6396 | 0.3835 | 0.2731 | ||||
| RNSC | 293 | 0.2843 | 0.4142 | 0.2560 | ||||
| MCODE | 83 | 0.3415 | 0.3625 | 0.1257 | ||||
| SPICI | 133 | 0.3443 | 0.4000 | 0.1952 | ||||
| COREPEEL | 723 | 0.4118 | 0.3699 | 0.2829 | ||||
| DSDCluster | 368 | 0.2672 | 0.4123 | 0.2720 | ||||
| CYC2008, SGD | ||||||||
| DAPG | 649 | 0.6760 | 0.4206 | 0.4115 | ||||
| GMFTP | 287 | 0.5921 | 0.5327 | 0.3682 | ||||
| ClusterONE | 411 | 0.5868 | 0.5284 | 0.3526 | ||||
| MCL | 377 | 0.4007 | 0.5140 | 0.2677 | ||||
| CFinder | 113 | 0.3939 | 0.3810 | 0.1849 | ||||
| DCAFP | 384 | 0.7929 | 0.4048 | 0.2797 | ||||
| RNSC | 293 | 0.4555 | 0.4863 | 0.2878 | ||||
| MCODE | 83 | 0.3436 | 0.3774 | 0.1149 | ||||
| SPICI | 133 | 0.5128 | 0.4592 | 0.2164 | ||||
| COREPEEL | 723 | 0.6053 | 0.4073 | 0.3943 | ||||
| DSDCluster | 368 | 0.4135 | 0.4899 | 0.2805 | ||||
| CYC2008, SGD, MIPS | ||||||||
| DAPG | 649 | 0.6734 | 0.4116 | 0.4022 | ||||
| GMFTP | 287 | 0.5914 | 0.5251 | 0.3578 | ||||
| ClusterONE | 411 | 0.5918 | 0.5196 | 0.3487 | ||||
| MCL | 377 | 0.4007 | 0.5041 | 0.2617 | ||||
| CFinder | 113 | 0.3871 | 0.3737 | 0.1788 | ||||
| DCAFP | 384 | 0.7756 | 0.3951 | 0.2752 | ||||
| RNSC | 293 | 0.4590 | 0.4772 | 0.2836 | ||||
| MCODE | 83 | 0.3467 | 0.3678 | 0.1122 | ||||
| SPICI | 133 | 0.5000 | 0.4513 | 0.2094 | ||||
| COREPEEL | 723 | 0.6046 | 0.3981 | 0.3883 | ||||
| DSDCluster | 368 | 0.4885 | 0.4799 | 0.2692 | ||||