Table 13. Performance comparison results of clustering and biological metrics in DIP-yeast.
| Approach | #C | FM | Acc | MMR | GoSim | Coloc. | SC | Time(s) |
|---|---|---|---|---|---|---|---|---|
| DIP-yeast | CYC2008 | |||||||
| DAPG | 1,925 | 0.3830 | 0.5486 | 0.4447 | 0.8133 | 0.6664 | 0.8082 | 6.23 |
| ClusterONE | 1,042 | 0.2436 | 0.6236 | 0.2794 | 0.6353 | 0.5682 | 0.4432 | 1.44 |
| MCL | 598 | 0.2685 | 0.6259 | 0.2389 | 0.5986 | 0.5355 | 0.4523 | 2.31 |
| CFinder | 198 | 0.2721 | 0.4272 | 0.1598 | 0.5843 | 0.4173 | 0.4371 | 3.02 |
| DCAFP | 492 | 0.7212 | 0.5631 | 0.2972 | 0.8897 | 0.7187 | 0.8289 | 3,848.32 |
| RNSC | 517 | 0.0108 | 0.2966 | 0.0063 | 0.8001 | 0.6218 | 0.1043 | 0.53 |
| MCODE | 78 | 0.2007 | 0.3734 | 0.0663 | 0.6784 | 0.4546 | 0.8023 | 33.42 |
| SPICI | 517 | 0.3007 | 0.5826 | 0.2394 | 0.6650 | 0.5697 | 0.6342 | 0.12 |
| COREPEEL | 742 | 0.5160 | 0.5679 | 0.3239 | 0.8287 | 0.6500 | 0.8277 | 0.16 |
| DSDCluster | 645 | 0.2787 | 0.5688 | 0.2606 | 0.6233 | 0.5442 | 0.4728 | 2,520.67 |
| SGD | ||||||||
| DAPG | 1,925 | 0.3473 | 0.4008 | 0.3620 | ||||
| ClusterONE | 1,042 | 0.2236 | 0.4684 | 0.2179 | ||||
| MCL | 598 | 0.2377 | 0.4454 | 0.1818 | ||||
| CFinder | 198 | 0.2133 | 0.3171 | 0.1145 | ||||
| DCAFP | 492 | 0.6089 | 0.4043 | 0.2329 | ||||
| RNSC | 517 | 0.0102 | 0.2116 | 0.0053 | ||||
| MCODE | 78 | 0.1641 | 0.2784 | 0.0530 | ||||
| SPICI | 517 | 0.2884 | 0.4322 | 0.1859 | ||||
| COREPEEL | 742 | 0.4854 | 0.4153 | 0.2761 | ||||
| DSDCluster | 645 | 0.2503 | 0.4079 | 0.2109 | ||||
| MIPS | ||||||||
| DAPG | 1,925 | 0.2992 | 0.3475 | 0.3607 | ||||
| ClusterONE | 1,042 | 0.1422 | 0.3697 | 0.1865 | ||||
| MCL | 598 | 0.1695 | 0.3598 | 0.1713 | ||||
| CFinder | 198 | 0.1739 | 0.2584 | 0.1069 | ||||
| DCAFP | 492 | 0.6181 | 0.3727 | 0.2649 | ||||
| RNSC | 517 | 0.0029 | 0.1717 | 0.0014 | ||||
| MCODE | 78 | 0.1562 | 0.2572 | 0.0451 | ||||
| SPICI | 517 | 0.2101 | 0.3561 | 0.1759 | ||||
| COREPEEL | 742 | 0.3938 | 0.3619 | 0.2428 | ||||
| DSDCluster | 645 | 0.1776 | 0.3525 | 0.1768 | ||||
| CYC2008, SGD | ||||||||
| DAPG | 1,925 | 0.4138 | 0.3769 | 0.3654 | ||||
| ClusterONE | 1,042 | 0.2690 | 0.4441 | 0.2076 | ||||
| MCL | 598 | 0.2835 | 0.4358 | 0.1725 | ||||
| CFinder | 198 | 0.2366 | 0.3053 | 0.1045 | ||||
| DCAFP | 492 | 0.6743 | 0.3806 | 0.2282 | ||||
| RNSC | 517 | 0.0092 | 0.1991 | 0.0040 | ||||
| MCODE | 78 | 0.1691 | 0.2663 | 0.0485 | ||||
| SPICI | 517 | 0.3041 | 0.4126 | 0.1651 | ||||
| COREPEEL | 742 | 0.5395 | 0.3871 | 0.2695 | ||||
| DSDCluster | 645 | 0.2866 | 0.3966 | 0.1896 | ||||
| CYC2008, SGD, MIPS | ||||||||
| DAPG | 1,925 | 0.4213 | 0.3684 | 0.3684 | ||||
| ClusterONE | 1,042 | 0.2718 | 0.4368 | 0.2009 | ||||
| MCL | 598 | 0.2832 | 0.4269 | 0.1646 | ||||
| CFinder | 198 | 0.2389 | 0.3003 | 0.1039 | ||||
| DCAFP | 492 | 0.6704 | 0.3723 | 0.2321 | ||||
| RNSC | 517 | 0.0089 | 0.1938 | 0.0037 | ||||
| MCODE | 78 | 0.1606 | 0.2588 | 0.0462 | ||||
| SPICI | 517 | 0.3131 | 0.4042 | 0.1620 | ||||
| COREPEEL | 742 | 0.5437 | 0.3788 | 0.2711 | ||||
| DSDCluster | 645 | 0.2914 | 0.3894 | 0.1840 | ||||