Table 16. Number of predicted complexes with perfect matching with complexes in references (CYC2008 and CORUM) (OS = 1.0).
| Small networks | ||||
| Approach | Collins | Krogan Core | Krogan Extended | Gavin |
| DAPG | 51 | 25 | 23 | 28 |
| GMFTP | 52 | 30 | 22 | 34 |
| ClusterONE | 42 | 23 | 19 | 28 |
| MCL | 40 | 17 | 8 | 19 |
| CFinder | 38 | 16 | 11 | 20 |
| DCAFP | 4 | 4 | 3 | 3 |
| RNSC | 45 | 26 | 15 | 24 |
| MCODE | 24 | 9 | 5 | 10 |
| SPICI | 23 | 12 | 18 | 23 |
| COREPEEL | 39 | 26 | 18 | 23 |
| DSDCluster | 11 | 17 | 8 | 20 |
| larger networks | ||||
| Approach | DIP-yeast | Biogrid-yeast | HPRD | Biogrid-human |
| DAPG | 22 | 2 | 39 | 8 |
| ClusterONE | 3 | 1 | 8 | 1 |
| MCL | 6 | 1 | 7 | 2 |
| CFinder | 13 | - | 4 | - |
| DCAFP | 8 | 0 | 2 | - |
| RNSC | 0 | 2 | 8 | 1 |
| MCODE | 3 | 0 | 2 | 1 |
| SPICI | 7 | 1 | 1 | 1 |
| COREPEEL | 11 | 2 | 46 | 11 |
| DSDCluster | 10 | 7 | 10 | 3 |