Table 4. MSP primer sequences.
| Name | Lightcycler MSP primers | |
|---|---|---|
| S primer | AS primer | |
| BIK | TTTTTGGAGTTTCGGTTTTTAC | CTTTACACGAATAACCTCCGTTC |
| CAT | GTTTGTTGTTTCGAGTTCGTG | ATCTTAACCTACCTAACGCCGA |
| CCND2 | CGGGGTTGTTTTATTCGTATCG | CAACCAACTTACGTCACCGCT |
| CDK5 | AGTTTTGCGGGAAATGTTAATAC | AAACTCCGATCTCAACAACGA |
| DAPK1 | TAAGGAGTCGAGAGGTTGTTTC | CCTACCGCTACGAATTACCGA |
| DCR1 | TTACGCGTACGAATTTAGTTAAC | CATCAAACGACCGAAACG |
| EEF1A2 (1) | GTTCGTGATTAGTAGAGTCGGGT | ACAACGAATAAAAATAAAACGCC |
| EEF1A2 (2) | TTAGGTTGGGTACGTTCGTGA | ACAACGAATAAAAATAAAACGCC |
| HOXA9 | AGGAGCGTATGTATTTGTCGTTC | AACGCTATACCCGCTACGATA |
| IRAK1 | AGGATGTGTACGAGGTCGGTT | CGAACTACGACTATACGAACGCT |
| LIG4 | GAGTTAAAAACGGGAGAAATCGT | CACAACGCTATAAACTACGCC |
| NUDT1 | GTATTTTTCGAGTTCGTTACGTTT | TCCTCTTAACGTCCAACGAC |
| PAX3 (1) | TTTGGGTATAGCGTCGGTT | ATTCCCGAAAATCATCCGC |
| PAX3 (2) | ATAGTTTTCGAGGGTTATTCGC | CCTAAACACAACGCCGACC |
| PRKCB1 | GTATCGCGTTTAGGTTTCGTTT | CCGACGCTACAAAACTACGA |
| PROK2 | ATAAAGGTTAGTTTCGTCGTGA | ACACGTACTCGTCTAAAAACCG |
| PROP1 | CGAGTTATGGAAGTAGAAAGGAGGC | ATAATCGAAATCCCAATAACCGA |
| PTGS2 | TTACGGAAATGAGAAAATCGG | GCCTAAAACGATAAAACTCGAAA |
| RASSF1 | GCGTATTGTAGGTTTTTGCGT | TAATCCCTAACCGTAACCACCG |
| RBBP8 | GTATTTTTATACGGGTAAGGCGA | TACCCCGCTACTCTACTCCGC |
| RHOB | AGGAGGGGATTCGGGTATC | TAATTAACGACCCAAACCG |
| SPO11 | AGTGTGGGTCGCGTAGGTATC | CTAAATCCAATATCCGCAACACG |
| TBX5 | TCGGTATTGATAGGCGAAGAC | CTATAAAACTTAAAAACGTCACGAA |
| TIPARP | TAAGGTTTACGAAATAGTCGGTC | ACTACCACCAAACGAAATCGC |
| Beta Actin | TAGGGAGTATATAGGTTGGGGAAGTT | AACACACAATAACAAACACAAATTCAC |
| Name | qMSP primers | |
| S primer | AS primer | |
| Beta Actin | TGGTGATGGAGGAGGTTTAGTAAGT | GAATTTTTTTATGTGTATGAATTTAGTTAAT |
| DCR1_U | GAATTTTTTTATGTGTATGAATTTAGTTAAT | CCATCAAACAACCAAAACA |
| DCR1_M | TTACGCGTACGAATTTAGTTAAC | CATCAAACGACCGAAACG |