Table 2.
Possible transcription factor binding motifs within the PRR of selected species screened using rVista 2.0.
| Species | Motif | Position | Sequence |
|---|---|---|---|
| Homo sapiens | CREB | 24+ | catggCATCAgttc |
| DR3 | 227− | cagaGGTTCACTAGAGTCaac | |
| DR4 | 230− | agGTTCACTAGAGTCAa | |
| Marmota marmota | PPAR_DR1 | 50− | tGGTCAAAGGACt |
| DR4 | 326− | tgGGTCCCTTAAGGTCa | |
| DR1 | 393− | TGACACTTATCCc | |
| Oryctolagus cuniculus | CREB | 373− | ccTAACATCAcc |
| CEBP | 519− | gcTCCATTGCCTAACTCt | |
| PPAR_DR1 | 592+ | tGGCCCTTGGCCc | |
| PPAR_DR1 | 601+ | gCCCCTTTGTCCc | |
| Camelus ferus | CEBP | 271− | taTACATTTGGGCATACt |
| CEBP | 503− | tgTTCCTTTCCTAATTGt | |
| CREB | 636− | tgtCATCAcct | |
| Bos taurus | CREB | 149+ | CGTCAg |
| CEBP | 240− | taTGCATTATAACAAACa | |
| CEBP | 471− | tgTTTCTTTCCTAATTTg | |
| PPAR_DR1 | 487+ | tGACCTTTGATAa | |
| PPAR_DR1 | 542+ | tGACCCTTGACCc | |
| Giraffa camelopardalis | CREB | 150+ | CGTCAg |
| CREB | 476− | tgTTTCTTTCCTAATTTg | |
| PPAR_DR1 | 492+ | tGACCTTTGATAa | |
| PPAR_DR1 | 547+ | tGACCCTTGACCc | |
| Balaenoptera acutorostrata | DR1 | 96+ | aGGGGAAGGGACA |
| CEBP | 518− | taTTTCTTTCCTAACTTt | |
| PPAR_DR1 | 587+ | tGGCCCTTGACCc | |
| DR1 | 587− | TGGCCCTTGACCc | |
| DR1 | 594− | TGACCCCTTTCCc | |
| Lipotes vexillifer | DR3 | 291+ | accGAACATTCTCAATCtgct |
| CEBP | 509− | taTTTCTTTCCTAACTTt | |
| PPAR_DR1 | 580+ | tGGCCCTTGACCc | |
| DR1 | 587− | TGACCCCTTTCCc | |
| Ceratotherium simum | DR1 | 108+ | aGGGGAAGGGACA |
| DR4 | 246− | agGATCACTAGAGTTAg | |
| CEBP | 284− | taTACATTTAGTCATACt | |
| DR3 | 304+ | accGAACATTCTCAATCtctg | |
| DR4 | 425+ | tGTCCTCTTTTGACAtt | |
| PPAR_DR1 | 453+ | tCACACTTGACCc | |
| Equus przewalskii | CEBP | 9+ | cTTTCACAAtcc |
| CREB | 36− | caTAGCGTCAgt | |
| CREB | 41+ | CGTCAg | |
| DR4 | 234− | agGTTCACTAGAGTTAg | |
| PPAR_DR1 | 537+ | tTACCTTTGACCa | |
| DR1 | 592− | TGGTCCTTGACCc | |
| CREB | 667+ | ttGCTGACTccc | |
| Equus caballus | DR4 | 224− | agGTTCACTAGAGTTAg |
| PPAR_DR1 | 524+ | tTACCTTTGACCa | |
| DR1 | 579− | TGGTCCTTGACCc | |
| CREB | 654+ | ttGCTGACTccc | |
| Pteroupus vampyrus | CREB | 37+ | catagCATCAgctc |
| DR4 | 408+ | tGTCCTCTTTTGACAtt | |
| PPAR_DR1 | 575+ | tGGCCCTTGACCc | |
| DR1 | 582− | TGACCCCTTTCCt | |
| Ailuropoda melanoleuca | DR1 | 85+ | aGGGGAAGGGACA |
| CREB | 505+ | ttGATGAGGccc | |
| DR1 | 554− | TGGCCCATGACCc | |
| PPAR_DR1 | 561+ | tGACCCTTTGCCt | |
| CREB | 628+ | ttGCTGACTccc | |
| Odobenus rosmarus | DR1 | 92+ | aGGGGAAGGGACA |
| DR4 | 406+ | tGTCCTCTTTTGACAtt | |
| DR1 | 567− | TGGCCCATGACCc | |
| PPAR_DR1 | 574+ | tGACCCTTTTCCt | |
| CREB | 670+ | ttGCTGACTccc | |
| Panthera pardus | DR4 | 240+ | tGTCCTCTTTTGACAca |
| Leptonychotes weddellii | DR1 | 90+ | aGGGGAAGGGACA |
| DR4 | 403+ | tGTCCTCTTTTGACAtt | |
| DR1 | 564− | TGGCCCATGACCc | |
| PPAR_DR1 | 571+ | tGACCCTTTTCCt | |
| CREB | 671+ | ttGCTGACTccc | |
| Procavia capensis | CREB | 59− | ccTAACATCAcc |
| DR1 | 273− | TGGTCCTTGACCt | |
| CREB | 278+ | cttgaCCTCAttgc | |
| CREB | 280+ | TGACCTca | |
| Loxodonta africana | CREB | 32+ | acataCATCAgctc |
| CREB | 347− | caTAACATCAcc | |
| CREB | 424− | tTGACG | |
| PPAR_DR1 | 566+ | tGGCCCTTGACCc | |
| Trichechus manatus | CREB | 140− | tgAGGTCA |
| CREB | 369− | taaCATCACCaa | |
| PPAR_DR1 | 587+ | tGGCCCTTGACCc | |
| Echinops telfairi | PPAR_DR1 | 189− | gGGTCAAGGATCa |
| CREB | 326− | ccTGACATCAct |
Duplicates sites were removed. Position is indicated relative to the start of the PRR sequence and the strand is indicated with + or − symbols.