Table 2.
Comparison of single-turnover parameters of LIG3β and LIG1
Single-turnover parameters were obtained at 150 mm ionic strength. All reactions contained 600 nm adenylylated enzyme and 100 nm nicked DNA substrate in the presence of 20 mm Mg2+ and the absence of ATP.
Kinetic parameter | LIG3β | LIG1a | Relative LIG1/LIG3β |
---|---|---|---|
kadenylylation (s−1)b | 1.6 ± 0.2 | 1.3 ± 0.3 | 0.81 |
ktransfer (s−1) | 0.89 ± 0.03 | 2.6 ± 0.6 | 2.9 |
kseal (s−1) | 19 ± 6 | 12 ± 2 | 0.63 |
KMg, transfer (mm) | 0.30 ± 0.07 | 0.15 ± 0.06 | 0.50 |
KMg, seal (mm) | 18 ± 3 | 2.6 ± 0.9 | 0.14 |
a LIG1 values were previously reported for Δ232 LIG1 under similar experimental conditions (34).
b The microscopic rate constant for enzyme adenylylation was calculated using a kcat value of 0.55 s−1 with the net rate constants equation (Equation 4). The error is represented as S.D. from the mean (n ≥ 3).