Table 2.

Rearrangements between C and R strain genomes taking the C genome as reference, i.e. insertions are corn-specific sequences and deletions are rice-specific sequences. Copy number gains (resp. loss) refer to duplications where the copy number is higher (resp. lower) in the C strain than in the R strain, the values refer to the number of duplication groups (not taking into account the number of copies).

	Insertion	Deletion	Copy number gain	Copy number loss	Inversion	Transposition
Number	1,108	1,009	475	417	49	271
Coverage	1.1 Mb	0.9 Mb	5.2 Mb	1.0 Mb	59 kb	345 kb