Table 1.

Validated variants associated with adjusted animal model fertility phenotype.

Gene	CHR	SNP	Location	Number genotyped	BETA	SE	R2	T	Frequency ‘low’	Frequency ‘high’	P-value	BH
FOXJ3	3	rs109065788	104587541	101	0.01473	0.0045	0.095	3.227	0.691	0.486	0.0016	0.069
LOC536148	30	rs42198966	3481991	110	-0.007747	0.0029	0.059	-2.625	0.414	0.58	0.0099	0.203
LOC100337009	27	rs437191942	6225144	110	0.01466	0.0063	0.047	2.324	0.085	0.113	0.0220	0.300
KIAA1549	4	rs378655691	103370232	106	-0.01466	0.0068	0.041	-2.131	0.074	0.133	0.0354	0.363
BBD124	13	rs43710895	61615527	106	0.007818	0.0042	0.031	1.85	0.297	0.36	0.0671	0.479
BBD123	13	rs43710844	61595572	102	0.007353	0.0040	0.031	1.795	0.531	0.453	0.0756	0.479
SIRPA	13	10509	53691410	108	0.01016	0.0057	0.028	1.757	0.095	0.1	0.0818	0.479

Table of validated variants associated with the adjusted animal model fertility phenotype P-value < 0.1. Gene = SNP annotated to nearest gene; CHR = Chromosome number; SNP = SNP identifier; Location = Chromosomal position (base-pair); Number genotyped = Number of bulls genotyped; BETA = Regression coefficient; SE = Standard error; R2 = Regression r-squared; T = Wald test (based on t-distribution); Frequency ‘low’ = SNP frequency in low-fertility bulls; Frequency ‘high’ = SNP frequency in high-fertility bulls; P = Wald test asymptotic P-value; BH = Benjamini-Hochberg multiple testing correction.