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. Author manuscript; available in PMC: 2017 Sep 26.
Published in final edited form as: Ann Appl Stat. 2017 Jul 20;11(2):1011–1039. doi: 10.1214/17-AOAS1033

Table 2.

Comparison of different methods using TCGA breast cancer (K = 5). G3 represents feature groups (gene symbol) where all three types of features are selected. Similarly, G2 represents feature groups (gene symbol) where only two types of features are selected; G1 represents feature groups (gene symbol) where only one type of feature is selected. We also compared the clustering result with PA M 50 subtype definition in terms of ARI

Method ARI nfeature G1 G2 G3 Time
ISKmeans 0.379 2066 843 538 49 12.1 mins
SparseKmeans 0.332 2034 1466 284 0 6.85 mins
iCluster 0.272 2475 1725 375 0 3.91 hours