Table 2. Conserved large stretches and blocks found among the MIPS homologous sequences.
Conserved Stretches | Domain | Converted sequences a | Blocks Involved |
---|---|---|---|
Stretch-1 | NAD+—binding | 45244464443448847747444448224473 | Block-F (F.1 and F.2) |
Stretch-2 | NAD+—binding | 34847588734546414444444 | Block-E |
Stretch-3 | Catalytic | 274441344444425774473824488144847 | Block-D |
458732721472784411644787443454125 | Block-C | ||
126444234534417224611377143644287 | Block-B | ||
44287611744445444144444144724 | Block-A |
The three large conserved stretches found across 172 homologous sequences with similarity ≥30%, represent the two important domains of MIPS quaternary structure. The conserved blocks within eukaryotic sequences with similarity ≥70%, named as blocks A, B, C, D E and F are underlined.
a The numbers from 1 to 8 in the converted sequences refer to the amino acids falling under Groups 1 to 8 as described in Materials and Methods, and Das et al. [20].