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. 2017 Sep 26;12(9):e0185351. doi: 10.1371/journal.pone.0185351

Table 3. Invariant amino acids found within the highly conserved patterns in eukaryotes and comparing them with the established crystal structures.

Conserved blocks Amino acid sequence a MtMIPS a TmMIPS a AfMIPS a ScMIPS a CeMIPS a OsMIPS a
Block A xnxcxDsll klevwD310sPN grinD316spa iwdaiD332aiv hnvceD438sll hntceD428sll hntceD422sll
Block B xxKxaxdey drK284wayvr dkK290fiaihi dnK306tafdfv dsK412vamdey dsK402ramdey dsK396ramdey
Block C frSKeisKx leS247K248kisK252t nkS256K257eftK261s keS273K274vlsK278d frS368K369eisK373s frS360K361eisK365s frS354K355eisK359s
Block D ixsyNhlGNnDg tmqlN229vgG232N233mD235f vaqfN238igG241N242mD244f wmsyN255ilG258dyD261g iasyN350hlG353N354nD356g ivsyN342hlG345N346nD348g ivsyN336hlG339N340nD342g
Block E F/YIngxpxxt F168vnalpvfi FI187andpa Y196anftpspgs YI293ngspqnt YI285ngspqnt FI279ngspqnt
Block F F.1: lGvL/ML/MI/VG and F.2: ltagxxA - - - lG67iMLIG72
tvasvlA87
tGlLLVG71
avgsifA86
lG63vMLVG68
ltagviA83

Mt- Mycobacterium tuberculosis, Tm- Thermotoga maritima, Af- Archaeglobus fulgidus, Sc- Saccharomyces cerevisiae and Ce- Caenorabditis elegans. OsMIPS is the plant model for comparison as there is no plant MIPS crystal structure reported till now.

a The underlined amino acids represented in upper case have ≥90% similarity across all 172 sequences studied. Locus of the individual residue in the protein sequence is denoted as subscript. The residues represented in upper case only have 50% similarity for that position. Lower case represents ≤50% similarity.