Table 3. Invariant amino acids found within the highly conserved patterns in eukaryotes and comparing them with the established crystal structures.
Conserved blocks | Amino acid sequence a | MtMIPS a | TmMIPS a | AfMIPS a | ScMIPS a | CeMIPS a | OsMIPS a |
---|---|---|---|---|---|---|---|
Block A | xnxcxDsll | klevwD310sPN | grinD316spa | iwdaiD332aiv | hnvceD438sll | hntceD428sll | hntceD422sll |
Block B | xxKxaxdey | drK284wayvr | dkK290fiaihi | dnK306tafdfv | dsK412vamdey | dsK402ramdey | dsK396ramdey |
Block C | frSKeisKx | leS247K248kisK252t | nkS256K257eftK261s | keS273K274vlsK278d | frS368K369eisK373s | frS360K361eisK365s | frS354K355eisK359s |
Block D | ixsyNhlGNnDg | tmqlN229vgG232N233mD235f | vaqfN238igG241N242mD244f | wmsyN255ilG258dyD261g | iasyN350hlG353N354nD356g | ivsyN342hlG345N346nD348g | ivsyN336hlG339N340nD342g |
Block E | F/YIngxpxxt | F168vnalpvfi | FI187andpa | Y196anftpspgs | YI293ngspqnt | YI285ngspqnt | FI279ngspqnt |
Block F | F.1: lGvL/ML/MI/VG and F.2: ltagxxA | - | - | - |
lG67iMLIG72 tvasvlA87 |
tGlLLVG71 avgsifA86 |
lG63vMLVG68 ltagviA83 |
Mt- Mycobacterium tuberculosis, Tm- Thermotoga maritima, Af- Archaeglobus fulgidus, Sc- Saccharomyces cerevisiae and Ce- Caenorabditis elegans. OsMIPS is the plant model for comparison as there is no plant MIPS crystal structure reported till now.
a The underlined amino acids represented in upper case have ≥90% similarity across all 172 sequences studied. Locus of the individual residue in the protein sequence is denoted as subscript. The residues represented in upper case only have 50% similarity for that position. Lower case represents ≤50% similarity.