Table 1. Summary of the DS data obtained for ELVd (12 mpi) and PSTVd (6 mpi) in eggplant1.
| ELVd | PSTVd | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Plant 1 | Plant 2 | Plant 3 | Plant 1 | Plant 2 | Plant 3 | |||||||
| Circ (+) | Oligo (–) | Circ (+) | Oligo (–) | Circ (+) | Oligo (–) | Circ (+) | Oligo (–) | Circ (+) | Oligo (–) | Circ (+) | Oligo (–) | |
| Total bases read | 172,111 | 136,598 | 211,559 | 248,762 | 134,976 | 447,920 | 1,657,249 | 1,294,481 | 1,395,515 | 1,531,703 | 1,065,790 | 1,236,993 |
| Mean depth | 583 | 463 | 717 | 843 | 458 | 1518 | 5434 | 4244 | 4575 | 5022 | 3494 | 4056 |
| Unique mutations2 | 178 | 173 | 200 | 212 | 161 | 279 | 178 | 284 | 124 | 107 | 101 | 62 |
| Total mutation count3 | 1902 | 2100 | 2614 | 3976 | 2985 | 10,616 | 298 | 914 | 198 | 185 | 141 | 103 |
| Mutation frequency4 (× 103) | 11.1 | 15.4 | 12.4 | 16.0 | 22.1 | 23.7 | 0.180 | 0.706 | 0.142 | 0.121 | 0.132 | 0.083 |
1A list of all mutations is provided in S1 Dataset
2Number of different mutations found (presence/absence)
3Number of mutation reads
4Total mutation count divided by total bases read