Table 1.
Raw and clean data from 24 NY (salt sensitive) and TC (salt tolerant) jute transcriptomes.
| Genotypes | Tissues | Raw Reads (bp) | Clean Reads (bp) | Clean Bases (Gb) | Mapped Reads (%) | Q20 | Avg. GC (%) | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Control | Salinity | Control | Salinity | Control | Salinity | Control | Salinity | (%) | |||
| NY | Leaf | 154,357,990 | 157,905,474 | 149,840,624 | 151,807,922 | 22.48 | 22.78 | 83.89% | 83.84% | >97 | 44.61 |
| Root | 170,983,540 | 150,144,930 | 165,732,832 | 145,221,480 | 24.86 | 21.78 | 80.72% | 80.98% | |||
| TC | Leaf | 154,625,422 | 146,504,736 | 149,883,254 | 140,337,978 | 22.48 | 21.06 | 83.47% | 83.22% | ||
| Root | 147,290,466 | 163,936,030 | 142,892,496 | 158,680,692 | 21.44 | 23.8 | 81.06% | 81.39% | |||
| Total | 1,245,748,588 | 1,204,397,278 (96.68%) | 180.68 | - | - | ||||||