Table 1. Final Set of Representative LIE Binding Affinity Models Derived from the Stochastic Approximate Inference of Model Parameters for the Data Set of 132 Putative Aromatase Inhibitorsa.
Model | n | α | β | γ | RMSE | r2 | q2LOO | SDEPLOO | r2bstr | RMSEbstr |
---|---|---|---|---|---|---|---|---|---|---|
1, center | 16 | 0.203 | 0.663 | 1.30 | 0.95 | 0.94 | 1.47 | 0.960.01 | 1.100.17 | |
1, center | 16 | 0.200 | 0.627 | –2.59 | 1.27 | 0.95 | 0.93 | 1.56 | 0.930.10 | 1.410.72 |
1, full | 31 | 0.233 | 0.675 | 2.36 | 0.86 | 0.83 | 2.57 | 0.870.03 | 2.230.22 | |
1, full | 31 | 0.226 | 0.576 | –7.32 | 2.11 | 0.89 | 0.85 | 2.41 | 0.890.04 | 1.980.23 |
2, center | 13 | 0.161 | 0.796 | 1.69 | 0.89 | 0.82 | 2.14 | 0.900.03 | 1.540.28 | |
2, center | 13 | 0.162 | 0.830 | 2.45 | 1.69 | 0.89 | 0.78 | 2.38 | 0.900.03 | 1.480.32 |
2, full | 52 | 0.107 | 0.748 | 2.59 | 0.76 | 0.76 | 2.59 | 0.730.03 | 2.710.10 | |
2, full | 52 | 0.101 | 0.696 | –2.54 | 2.55 | 0.77 | 0.74 | 2.69 | 0.750.02 | 2.650.07 |
3, center | 15 | 0.134 | 0.893 | 1.47 | 0.93 | 0.91 | 1.69 | 0.930.02 | 1.460.16 | |
3, center | 15 | 0.125 | 0.838 | –3.23 | 1.42 | 0.93 | 0.86 | 2.11 | 0.940.05 | 1.300.12 |
3, full | 31 | 0.108 | 0.868 | 1.68 | 0.92 | 0.91 | 1.80 | 0.920.02 | 1.620.17 | |
3, full | 31 | 0.110 | 0.877 | 0.495 | 1.68 | 0.92 | 0.90 | 1.89 | 0.920.02 | 1.660.11 |
Model statistics are reported for three representative LIE binding affinity models trained with and without γ parameter (kJ mol–1) for ligands belonging to the full model cluster (full) and the cluster center only (center, within 75% confidence interval). Root-Mean-Square Error (RMSE, kJ mol–1) and coefficient of determination (r2) model statistics are reported for the model, as well as for the bootstrap cross-validated model (bstr) and Leave-One-Out (LOO) cross-validated model (as Standard Error in Prediction (SDEP, kJ mol–1) and cross-validated r2 (q2)). Bootstrap cross validation was performed using a 20-fold random sampling with a training set of 75% of the model data set.