Table S1.
Primers
| Primer no. | Gene | Sequence |
| RT-PCR | ||
| 76 | GAPDH +51F | ATGGTGAAGGTCGGTGTGAA |
| 77 | GAPDH +280R | TCCTGGAAGATGGTGATGGG |
| 350 | Lhb +179F | CTAGCATGGTCCGAGTACTG |
| 351 | Lhb +301R | CTGAGGGCTACAGGAAAGGA |
| 184 | RPLP0 +196F | GCGACCTGGAAGTCCAACTA |
| 185 | RPLP0 +296R | ATCTGCTTGGAGCCCACAT |
| 326 | Tet1 exon 11F | GAGCCTGTTCCTCGATGTGG |
| 327 | Tet1 exon 11R | CAAACCCACCTGAGGCTGTT |
| 790 | Tet1 exon 1F | TCCTAGGACAGGCCTTTAGT |
| 791 | Tet1 exon 1R | CTATCCATATCCATAGCCAC |
| 792 | Tet1 exon 3F | CTGGAACAAGTGGTAGCCAT |
| 793 | Tet1(5′RACE) exon 3R | GGTCTTTTCTCACCGAATGA |
| 798 | Tet1 exon 2F | GTTACAAAAGAAAACAAGAGGC |
| 800 | Tet1 exon 1.5F | GGAGGCTTCCTCTGCAGAA |
| 801 | Tet1 exon 1.5R | TGCATAAATAAAGATGGAGGG |
| 804 | Tet1 exon 2R | CTTTAAAACTTTGGGCTTCTTT |
| 799 | Tet1(5′RACE nested) exon 3R | TTCAAGGGGATGTGTGATCAA |
| 292 | Tet2 +4248F | ACTTCTCTGCTCATTCCCACAGA |
| 293 | Tet2 +4347R | TTAGCTCCGACTTCTCGATTGTC |
| 294 | Tet3 +3393F | GAGCACGCCAGAGAAGATCAA |
| 295 | Tet3 +3492R | CAGGCTTTGCTGGGACAATC |
| 219 | Fshb +637F | GCTGGAGAGCAATCTGCTGCCA |
| 220 | Fshb +795R | TATTGGGCCGAGCTGGGTCCTTA |
| 35 | Cga +97F | ATGGATTACTACAGAAAATATGCAG |
| 36 | Cga +196R | CCTGAATAATAAAGTCTCCATCAGG |
| 1194 | PGR F | CAGAAAGGGGTTGTCCCCAG |
| 1195 | PGR R | TTCCGGAAATTCCACAGCCA |
| ChIP/MeDIP/5hmC real-time PCR | ||
| 21 | Lhb +591F | GTCCGAGTACTGCCGGCT |
| 351 | Lhb +727R | CTGAGGGCTACAGGAAAGGA |
| 661 | Lhb −107F | CCCAAAGAGATTAGTGTGTCTAG |
| 662 | Lhb −33R | TGCGGGTTGTGGGGGTGGCA |
| 363 | Lhb −83R | GCTTGGGTAACCTAGACACT |
| 260 | Lhb −284F | GACGTTTACTCCAGCAATCTGG |
| 181 | Lhb −151R | GTGTCCCAGTGAATTGGCCTCA |
| 370 | Lhb −170F | CACTGGGACACTGGAGCTA |
| 366 | Lhb −518F | CTTACTTCCAGAGTTCCTCC |
| 367 | Lhb −401R | GCACCACCGTCTCCCAGCCC |
| 55 | Lhb −950F | ATCTGAACTCTGCTGCACTT |
| 56 | Lhb −700R | TGTACTGGGCAAATTCGGTC |
| 59 | Lhb −1900F | GAATCTTTGGGCTCCCTTC |
| 60 | Lhb −1700R | CAGGCTCCTTCCTGCAGTGC |
| 727 | Lhb −4849R | GGCAGTTCCCAAGCCTGGA |
| 596 | Lhb −5005F | GCTCTCAGAATGCAAGGCTA |
| 396 | Lamc3 +89F | ACATGGGCTCTTGCTACGAC |
| 397 | Lamc3 +316R | GGCTGTGGAAGTCTGTGAGG |
| 415 | GAPDH −226F | GGAAGCAGCATTCAGGTCTC |
| 416 | GAPDH −148R | CAGGATAGGACTCAGGGAATACAG |
| 808 | Tet1 −24,439F | GTAAGTACACCATAGCTGTCCT |
| 809 | Tet1 −24,314R | AGTGCCCACTGCTCTTCCTAA |
| 831 | Tet1 −22,274F | GTCACCTGGATGACCCGACT |
| 1154 | Tet1 −22,098F | AGGAAGGAGTGGACAGGAGAA |
| 1155 | Tet1 −22,037F | TCGCATTTTGCCTCTCGCTCA |
| 626 | Tet1 −21,911F | GTACCCGCGCACTCCGCTC |
| 1168 | Tet1 −21,800F | CTGCCTCTTCTACGGGAACATTCG |
| 627 | Tet1 −21,782R | GTTCCCGTAGAAGAGGCAGG |
| 628 | Tet1 −21,491F | GGATCTCGATCGGGCTAGG |
| 830 | Tet1 −21,420R | GCGCGGAGTTGACTCGCAC |
| 629 | Tet1 −21,361R | CGCGAGCATTGTTAGTCACC |
| 785 | Tet1 −21,187F | GGCGATAGCTTTTGCCAGCGA |
| 783 | Tet1 −20,943F | GACTGGTTCTGGGATCCTGGA |
| 784 | Tet1 −20,840R | GCTCCCGGAGCTCACGTGCA |
| 787 | Tet1 −19,349F | GAGTTAACTATTGCTCTCAGATT |
| 788 | Tet1 −19,216R | CAGGAAGGATGTGTCCAGAAG |
| 643 | Tet1 −14,665F | GGCAACACCTCCAGATTCTC |
| 770 | Tet1 −14,572R | CTCGAGGGCTGCAGAGTAAGTAAAGA |
| 843 | Tet1 −191F | GCTAAGGGAGACTCCTCCAT |
| 853 | Tet1 −2R | AAGCTTTCCCAGACAAAGGATCTCCT |
| 839 | Tet1 −53F | GCCTGTGTCCTGTGGTGAGA |
| 838 | Tet1 +68R | CCACAAAGAGTGCAGCCAAT |
| 1178 | Tet1 (−1900) F | TTGCTCTATACAGCTATGGCT |
| 1179 | Tet1 (−1600) R | CTGCCCTGCCCTGTACAAA |
| 1180 | Tet1 (−1580) F | TGGAGGATGGTGTAAAGAGAA |
| 1181 | Tet1 (−1300) R | TTGGCAGGATTGCCTGGCTGC |
| 1182 | Tet1 (−1280) F | ATCCTGCAAATGTACTGCAG |
| 1183 | Tet1 (−1000) R | ACTGCACCCATACTCAGTGA |
| 1184 | Tet1 (−950) F | TCAGGTGTGTGTGTGTGTGT |
| 1185 | Tet1 (−700) R | GATGACCTTCAGTGCCCAG |
| 1249 | Tet1 (−720) F | GTTTCTCTGGGCACTGAAGG |
| 1250 | Tet1 (−400) R | ATTGGCGATATTGAAGGCAG |
| 1189 | Tet1 (−330) F | GCACAATACCTTCCAGGGTT |
| 1190 | Tet1 (−1) R | TCCCAGACAAAGGATCTCCT |
| 173 | H19F (positive MeDIP control) | GCATGGTCCTCAAATTCTGCA |
| 174 | H19R (positive MeDIP control) | GCATCTGAACGCCCCAATTA |
| 624 | Tet1 -22,569F (negative MeDIP control) | GTGTAAAGCCACAAGCCAGT |
| 625 | Tet1 -22,464R (negative MeDIP control) | GCATATCCCAAGGTAAGATAG |
| 790 | Tet1 exon 1F (AR ChIP negative control) | TCCTAGGACAGGCCTTTAGT |
| 791 | Tet1 exon 1R(AR ChIP negative control) | CTATCCATATCCATAGCCAC |
| 1366 | Tubb3 ARE1 forward (AR ChIP positive control) | TGGCCCCCAGAACAGAAG |
| 1367 | Tubb3 ARE1 reverse (AR ChIP positive control) | TGGTGTTCCCACTCTGTACAATG |
| BS conversion PCR | ||
| 1158 | Tet1 −296F | GTATAATATTTTTTAGGGTTGTTGTG |
| 1159 | Tet1-42R | CAAAACACAAACAACCACAAACTAC |
| 691 | Tet1 −21,929F | GGGTTGATTTGGTTGGGAGTATT |
| 692 | Tet1 −21,617R | CCTACACCAATCCTTAAACAAACT |
| 693 | Tet1 −21,639F | GTTTGTTTAAGGATTGGTGTAGGTTT |
| 694 | Tet1 −21,312R | ATCCTAACCAAAACTAACTAAACTT |
| Chromatin conformation assay | ||
| 843 | Tet1 −191 | GCTAAGGGAGACTCCTCCAT |
| 842 | Tet1 −221 | GACCTGCCCTGGTGCCACC |
| 878 | Tet1 −3416 | GCATGTGCAGGACTGGAGAGA |
| 845 | Tet1 −14991 | GATTCACTATGTAGCTATGGATG |
| 844 | Tet1 −15011 | TGTAGCCCAGACTGGCCTCA |
| 873 | Tet1 −15122 | GAATCGCCATGTACATGCTGG |
| 874 | Tet1 −18282 | GGAACTTGCTCTGTAGACCAGG |
| 875 | Tet1 −19592 | GATATGCACCCTCCACTGCTG |
| 851 | Tet1 −21581 | CAGAGGCAGTTTAGGGTGAGC |
| 850 | Tet1 −21680 | GCCTCAGGCTCCAAAGTTGC |
| 852 | Tet1 −22485 | GCTATCTTACCTTGGGATATGC |
| 876 | Tet1 −24521 | GAGCCATTTCGCCTGCCCAA |