Table 1.
Primer | Accession # | Sequences (forward, reverse) | Functional Role | Ref. |
---|---|---|---|---|
B-actin | V01217 | 5′-GTC GTA CCA CTG GCA TTG TG-3′ 5′-GCC ATC TCT TGC TCG AAG TC-3′ |
Stably expressed cytoskeletal actin; used as a housekeeping gene | (51) |
c-Fos | NM_016992.1 | 5′-CCA AGC GGA GAC AGA TCA AC-3′ 5′-AAG TCC AGG GAG GT CACA GA-3′ |
Immediate early gene, expression signifies cellular activity; used as a general index of cellular activation | (52) |
IL-1β | NM_031512 | 5′-AGG ACC CAA GC ACCT TCT TT-3′ 5′-AGA CAG CAC GAG GCA TTT TT-3′ |
Inflammatory cytokine, rapidly expressed in response to stressors | (18) |
IL-6 | NM_012589 | 5′-TAG TCC TTC CTA CCC CAA CTT CC-3′ 5′-TTG GTC CTT AGC CAC TCC TTC-3′ |
Has both pro- and anti-inflammatory roles, expressed in response to infection and stressors | (53) |
TNF-α | NM_012675 | 5′-GGG GCC ACC ACG CTC TTC TG-3′ 5′-CGA CGT GGG CTA CGG GCT TG-3′ |
Endogenous pyrogen primarily expressed by macrophages in response to infection and stressors | (54) |
CD14 | NM_021744.1 | 5′-TCC ATC GGT GCT CAC AAA TA-3′ 5′-TTG GGG ATT TAG CTC AGT GG-3′ |
Cell surface molecule, co-receptor for detection of bacterial LPS; often used as a marker of microglial activity | (55) |
CD200 | NM_031518.2 | 5′-CTG CCA TCT GTC CAC CTA CA-3′ 5′-AAG GGT TCC TGG GTT GTT TT-3′ |
Signaling molecule released by neurons important in regulating the inflammatory response; expression levels reflect neuronal-sourced dampening of inflammatory microglial activity | (56) |
CD200R | NM_023953.1 | 5′-CTG CTC TGC TGC CCT TCT AT-3′ 5′-ATG GGT CTC CCT TGT GTC TG-3′ |
Cell-surface molecule on microglia important in regulating the inflammatory response; serves as a marker of microglial activity | (56) |
GFAP | NM_018009.2 | 5′-GAG CCC CTA ACT CTG TGC TG-3′ 5′-GCA CAC CTC ACA TCA CAT CC-3′ |
Expressed by active astrocytes, involved in cell communication and the response to insult | (48) |