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. Author manuscript; available in PMC: 2018 Sep 1.
Published in final edited form as: J Neuroendocrinol. 2017 Sep;29(9):10.1111/jne.12514. doi: 10.1111/jne.12514

Table 1.

Primers, accession numbers, sequences, and functional roles of targets in real-time RT-PCR for all gene expression studies.

Primer Accession # Sequences (forward, reverse) Functional Role Ref.
B-actin V01217 5′-GTC GTA CCA CTG GCA TTG TG-3′
5′-GCC ATC TCT TGC TCG AAG TC-3′
Stably expressed cytoskeletal actin; used as a housekeeping gene (51)
c-Fos NM_016992.1 5′-CCA AGC GGA GAC AGA TCA AC-3′
5′-AAG TCC AGG GAG GT CACA GA-3′
Immediate early gene, expression signifies cellular activity; used as a general index of cellular activation (52)
IL-1β NM_031512 5′-AGG ACC CAA GC ACCT TCT TT-3′
5′-AGA CAG CAC GAG GCA TTT TT-3′
Inflammatory cytokine, rapidly expressed in response to stressors (18)
IL-6 NM_012589 5′-TAG TCC TTC CTA CCC CAA CTT CC-3′
5′-TTG GTC CTT AGC CAC TCC TTC-3′
Has both pro- and anti-inflammatory roles, expressed in response to infection and stressors (53)
TNF-α NM_012675 5′-GGG GCC ACC ACG CTC TTC TG-3′
5′-CGA CGT GGG CTA CGG GCT TG-3′
Endogenous pyrogen primarily expressed by macrophages in response to infection and stressors (54)
CD14 NM_021744.1 5′-TCC ATC GGT GCT CAC AAA TA-3′
5′-TTG GGG ATT TAG CTC AGT GG-3′
Cell surface molecule, co-receptor for detection of bacterial LPS; often used as a marker of microglial activity (55)
CD200 NM_031518.2 5′-CTG CCA TCT GTC CAC CTA CA-3′
5′-AAG GGT TCC TGG GTT GTT TT-3′
Signaling molecule released by neurons important in regulating the inflammatory response; expression levels reflect neuronal-sourced dampening of inflammatory microglial activity (56)
CD200R NM_023953.1 5′-CTG CTC TGC TGC CCT TCT AT-3′
5′-ATG GGT CTC CCT TGT GTC TG-3′
Cell-surface molecule on microglia important in regulating the inflammatory response; serves as a marker of microglial activity (56)
GFAP NM_018009.2 5′-GAG CCC CTA ACT CTG TGC TG-3′
5′-GCA CAC CTC ACA TCA CAT CC-3′
Expressed by active astrocytes, involved in cell communication and the response to insult (48)