Table 1.

Databases where the necessary information needed to build a metabolic resource allocation model can be found.

Resource	Link	Reference
Annotated genome sequences
Genbank	https://www.ncbi.nlm.nih.gov/genbank/	Benson et al. [27]
UniProtKB	http://www.uniprot.org/	The UniProt Consortium [28]
Metabolic network reconstructions
BiGG	http://bigg.ucsd.edu/	King et al. [29]
BioModels	https://www.ebi.ac.uk/biomodels-main/	Juty et al. [30]
ModelSEED	http://modelseed.org/	Devoid et al. [31]
KEGG	http://www.genome.jp/kegg/pathway.html	Kanehisa and Goto [18]
Pathway Tools	http://bioinformatics.ai.sri.com/ptools/	Karp et al. [32]
Enzyme subunit stoichiometry
UniProtKB	http://www.uniprot.org/	The UniProt Consortium [28]
Ribosome composition
Ribosomal Protein Gene Database	http://ribosome.med.miyazaki-u.ac.jp/	Nakao et al. [33]
KEGG	http://www.genome.jp/kegg/	Kanehisa and Goto [18]
Quantitative proteomics datasets
MaxQuant	http://maxqb.biochem.mpg.de/mxdb/	Schaab et al. [34]
Proteomaps	https://www.proteomaps.net/index.html	Liebermeister et al. [35]
Turnover rates
BRENDA	http://www.BRENDA-enzymes.org/	Schomburg et al. [36]
SABIO-RK	http://sabio.villa-bosch.de/	Wittig et al. [37]