Table 2.
Al-regulated genes encoding transcription factors.
| Gene ID | Fold Change | TAIR ID | Description | Category 1 | Biological Processes 2 |
|---|---|---|---|---|---|
| Upregulated | |||||
| comp24276_c0_seq2 | 1.391 | AT1G46768 | Related to AP2 1 | AP2-EREBP | Ethylene-activated signaling pathway, response to cold, response to water deprivation |
| comp28160_c0_seq1 | 1.029 | AT4G36900 | Related to AP2 10 | AP2-EREBP | Ethylene-activated signaling pathway |
| comp27009_c0_seq1 | 1.045 | ||||
| comp4672_c0_seq1 | 1.329 | AT1G76110 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | ARID | Karyogamy, polar nucleus fusion |
| comp13872_c0_seq1 | 1.257 | ||||
| comp28434_c0_seq1 | 1.029 | AT5G49700 | AT-HOOK motif nuclear localized protein 17 | AT-hook | Unknown |
| comp20160_c0_seq1 | 1.651 | AT5G43700 | IAA4 | AUX/IAA | Response to auxin |
| comp32831_c0_seq1 | 1.326 | ||||
| comp27076_c0_seq2 | 1.084 | AT1G09530 | Phytochrome interacting factor 3 | bHLH | De-etiolation, gibberellic acid-mediated signaling pathway, positive regulation of anthocyanin metabolic process, red or far-red light signaling pathway |
| comp17528_c0_seq2 | 1.750 | AT3G19860 | BHLH121 | bHLH | Unknown |
| comp2972_c0_seq1 | 1.898 | ||||
| comp28503_c0_seq1 | 1.511 | AT5G61270 | Basic helix-loop-helix (bHLH) phytochrome interacting factor | bHLH | De-etiolation, red, far-red light phototransduction |
| comp16875_c0_seq1 | 1.294 | AT5G67060 | Encodes a bHLH transcription factor | bHLH | Carpel formation, gynoecium development, regulation of auxin polar transport, transmitting tissue development |
| comp24549_c0_seq1 | 1.005 | AT3G17609 | HY5-homolog | bZIP | Red, far-red light phototransduction, response to UV-B, response to karrikin |
| comp21671_c0_seq1 | 1.015 | ||||
| comp31175_c0_seq1 | 1.074 | AT5G28770 | Basic leucine zipper 63 | bZIP | Response to abscisic acid, response to glucose |
| comp30394_c0_seq1 | 1.113 | ||||
| comp18077_c0_seq1 | 1.106 | AT1G68520 | B-Box domain protein 14 | C2C2-CO-LIKE | Unknown |
| comp31981_c0_seq1 | 1.432 | AT5G24930 | Constans-like 4 | C2C2-CO-LIKE | Regulation of flower development |
| comp31991_c0_seq2 | 1.037 | AT5G57660 | Constans-like 5 | C2C2-CO-LIKE | Regulation of flower development |
| comp31991_c0_seq1 | 1.291 | ||||
| comp5736_c0_seq1 | 1.243 | AT3G21270 | DOF zinc finger protein 2 | C2C2-Dof | Unknown |
| comp13725_c0_seq1 | 1.216 | ||||
| comp60617_c0_seq1 | 1.144 | AT3G47500 | Cycling DOF factor 3 | C2C2-Dof | Flowering |
| comp27353_c0_seq1 | 1.010 | AT2G05160 | CCCH-type zinc finger family protein with RNA-binding domain | C3H | Unknown |
| comp30562_c0_seq1 | 1.351 | AT2G20570 | Golden 2-like 1 | G2-like | Chloroplast organization, negative regulation of flower development, negative regulation of leaf senescence, regulation of chlorophyll biosynthetic process |
| comp32323_c0_seq1 | 1.064 | AT3G04450 | Homeodomain-like superfamily protein | G2-like | Unknown |
| comp25041_c0_seq1 | 1.177 | AT2G46680 | Homeobox 7 | HB | Response to abscisic acid, response to water deprivation |
| comp28163_c0_seq1 | 1.160 | ||||
| comp32393_c0_seq2 | 1.239 | AT5G04760 | Duplicated homeodomain-like superfamily protein | MYB | Unknown |
| comp110794_c0_seq1 | 1.074 | AT2G46830 | Circadian clock-associated 1 | MYB-related (flower) | Flowering |
| comp80633_c0_seq1 | 1.173 | ||||
| comp30095_c0_seq1 | 1.245 | AT1G01720 | ATAF1 | NAC | Negative regulation of abscisic acid-activated signaling pathway |
| comp47425_c0_seq1 | 2.096 | AT3G15500 | ANAC055 | NAC | Jasmonic acid-mediated signaling pathway, response to water deprivation |
| comp26124_c0_seq1 | 2.605 | AT3G15510 | ANAC056 | NAC | Jasmonic acid-mediated signaling pathway, response to water deprivation |
| comp27368_c0_seq1 | 1.295 | AT1G32700 | PLATZ transcription factor family protein | PLATZ | Unknown |
| comp28592_c0_seq2 | 1.021 | AT4G17900 | PLATZ transcription factor family protein | PLATZ | Unknown |
| comp83456_c0_seq1 | 1.048 | AT4G02020 | SET domain-containing protein 10 | SET | Endosperm development |
| comp94475_c0_seq1 | 1.981 | AT5G13080 | WRKY75 | WRKY | Atrichoblast differentiation, lateral root development, induced by Pi starvation |
| comp87094_c0_seq1 | 2.190 | ||||
| Downregulated | |||||
| comp23084_c0_seq1 | −1.004 | AT4G34590 | Basic leucine-zipper 11 | bZIP | Response to sucrose |
| comp7947_c0_seq1 | −1.088 | AT1G75710 | C2H2-like zinc finger protein | C2H2 | Unknown |
| comp18294_c0_seq1 | −1.002 | AT5G28640 | GRF1-interacting factor 1 | GIF | Adaxial/abaxial pattern specification, leaf development |
| comp30187_c0_seq2 | −1.260 | AT4G24540 | Agamous-like 24 | MADS | Flowering |
| comp30099_c0_seq1 | −1.224 | ||||
| comp30187_c0_seq1 | −1.219 | ||||
| comp17187_c0_seq1 | −1.042 | AT1G73230 | Nascent polypeptide-associated complex NAC | TF_GTF | Response to salt stress |
| comp27260_c0_seq1 | −1.051 | ||||
| comp27190_c0_seq1 | −1.004 | ||||
1 Transcription factor category was assigned based on Mitsuda and Ohme-Takagi [24]; 2 biological processes were assumed according to TAIR gene ontology (GO) analysis.