Table 2.
The significant enrichment pathways with differential expressed proteins.
| Comparison | Pathway | Differential Proteins with Pathway Annotation (121) | All Proteins with Pathway Annotation (1871) | p Value | Pathway ID |
|---|---|---|---|---|---|
| Q vs. control | Cysteine and methionine metabolism | 9 (7.44%) | 39 (2.08%) | 0.0005958267 | ko00270 |
| Glyoxylate and dicarboxylate metabolism | 8 (6.61%) | 47 (2.51%) | 0.009008489 | ko00630 | |
| Phenylpropanoid biosynthesis | 9 (7.44%) | 58 (3.1%) | 0.01050140 | ko00940 | |
| Carbon metabolism | 18 (14.88%) | 159 (8.5%) | 0.01124338 | ko01200 | |
| C5-Branched dibasic acid metabolism | 2 (1.65%) | 5 (0.27%) | 0.03646180 | ko00660 | |
| Ascorbate and aldarate metabolism | 4 (3.31%) | 22 (1.18%) | 0.04913111 | ko00053 | |
| Metabolic pathways | 55 (45.45%) | 710 (37.95%) | 0.04918179 | ko01100 | |
| Q + SA vs. Q | Alanine, aspartate and glutamate metabolism | 5 (5.15%) | 28 (1.5%) | 0.01281717 | ko00250 |
| Riboflavin metabolism | 3 (3.09%) | 11 (0.59%) | 0.01644878 | ko00740 | |
| Arginine biosynthesis | 4 (4.12%) | 21 (1.12%) | 0.02056896 | ko00220 | |
| Terpenoid backbone biosynthesis | 3 (3.09%) | 12 (0.64%) | 0.02111914 | ko00900 | |
| 2-Oxocarboxylic acid metabolism | 5 (5.15%) | 32 (1.71%) | 0.02229215 | ko01210 | |
| Q + SA vs. control | Photosynthesis | 11 (6.29%) | 52 (2.78%) | 0.006954811 | ko00195 |
| Metabolic pathways | 82 (46.86%) | 710 (37.95%) | 0.007189333 | ko01100 | |
| Photosynthesis-antenna proteins | 4 (2.29%) | 13 (0.69%) | 0.02696767 | ko00196 | |
| Biosynthesis of amino acids | 18 (10.29%) | 123 (6.57%) | 0.03282929 | ko01230 | |
| Pyrimidine metabolism | 6 (3.43%) | 27 (1.44%) | 0.03444194 | ko00240 | |
| Valine, leucine and isoleucine biosynthesis | 3 (1.71%) | 9 (0.48%) | 0.04427594 | ko00290 | |
| Pentose and glucuronate interconversions | 4 (2.29%) | 15 (0.8%) | 0.04442334 | ko00040 |