Table 4.
Number of sequencing reads mapped to ResFinder database and genomic reference sequences of C. jeikeium and M. abscessus.
| ResFinder | C. jeikeium | M. abscessus | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Identity: | 0.9 | 0.3 | 0.5 | 0.9 | 0.3 | 0.5 | 0.9 | ||
| Gene | Allele | Classes of Antibiotics | |||||||
| erm(X) | erm(X)_4_NC_005206 | Macrolide | 544 | 544 | 544 | 538 | 0 | 0 | 0 |
| erm(X) | erm(X)_2_X51472 | Macrolide | 185 | 185 | 185 | 181 | 0 | 0 | 0 |
| erm(X) | erm(X)_1_M36726 | Macrolide | 49 | 49 | 49 | 49 | 0 | 0 | 0 |
| erm(41) | erm(41)_1_EU177504 | Macrolide | 17 | 0 | 0 | 0 | 17 | 17 | 16 |
| mef(A) | mef(A)_10_AF376746 | Macrolide | 13 | 0 | 0 | 0 | 0 | 0 | 0 |
| aadD | aadD_1_AF181950 | Aminoglycoside | 10 | 0 | 0 | 0 | 0 | 0 | 0 |
| msr(D) | msr(D)_2_AF274302 | Macrolide, lincosamide and streptogramin B | 7 | 0 | 0 | 0 | 0 | 0 | 0 |
| tet(O) | tet(O)_2_M20925 | Tetracycline | 5 | 0 | 0 | 0 | 0 | 0 | 0 |
| tet(O) | tet(O)_3_Y07780 | Tetracycline | 5 | 0 | 0 | 0 | 0 | 0 | 0 |
| mph(C) | mph(C)_2_AF167161 | Macrolide | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
| tet(O) | tet(O)_1_M18896 | Tetracycline | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
| mecA | mecA_10_AB512767 | β-lactam | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| cfxA2 | cfxA2_1_AF504914 | β-lactam | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| cfxA | cfxA_1_U38243 | β-lactam | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| msr(A) | msr(A)_1_X52085 | Macrolide, lincosamide and streptogramin B | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| tet(M) | tet(M)_3_U08812 | Tetracycline | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Total number of reads | 847 | ||||||||