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. 2017 Sep 27;9:86. doi: 10.1186/s13073-017-0473-6

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Overview of the HLAProfiler workflow. The HLAProfiler workflows to create the reference k-mer profile database (green) and HLA calling in RNA-seq data (blue). Each step label in the workflow corresponds to the text (see “Implementation”). The workflows share the k-mer filtering and profile creation step (blue/green box)