Table II. Features of breakpoint junctions sequenced in derivative chromosomes of TB.
| Sequenced Breakpoint Junction | Sequenced Length | Microhomology in Junction | Breakpoint Flank | Repetitive Elements | Repetitive Element in Total Sequenced Junctions | Repetitive Element in the Grapevine Reference Genome |
|---|---|---|---|---|---|---|
| T1 | 730 bp | Blunt ends | T1_LG2 | Gypsy-27_VV-I | 8.9% | 1.19% |
| T1_LG9 | – | |||||
| T2 | 621 bp | Blunt ends | T2_LG2 | VHARB-N2_VV | 7.1% | 0.10% |
| T2_LG5 | – | |||||
| T3 | 529 bp | 1 bp in an 8-bp palindrome | T3_LG2 | – | ||
| T3_LG5 | VLINE1_VV | 5.2% | 1.91% | |||
| T4 | 437 bp | 2 bp | T4_LG2 | – | ||
| T4_LG5 | – | |||||
| T5 | 807 bp | Blunt ends | T5_Proximal | VIHAT3 | 10.9% | 0.12% |
| T5_Distal | – | |||||
| Inv | 647 bp | 7 bp | Inv_Proximal | – | ||
| Inv_Distal | – |