Table. Genome characteristics of 4 carbapenemase-producing Vibrio cholerae isolates from coastal waters of Germany*.
| Characteristic | Isolate |
|||
|---|---|---|---|---|
| VN-2808 | VN-2825 | VN-2923 | VN-2997 | |
| No. genes | 3,934 | 3,921 | 4,040 | 3,933 |
| Coding genes | 3,545 | 3,608 | 3,650 | 3,612 |
| No. CDS | 3,813 | 3,803 | 3,920 | 3,814 |
| Coding CDS | 3,545 | 3,608 | 3,650 | 3,612 |
| No. RNA genes | 121 | 118 | 120 | 119 |
| No. rRNAs (5S, 16S, 23S) | 10, 12, 7 | 10, 12, 4 | 10, 11, 7 | 10, 12, 4 |
| Complete rRNAs (5S, 23S) | 10, 1 | 10, 1 | 10, 1 | 10, 1 |
| Partial rRNAs (16S, 23S) | 12, 6 | 12, 3 | 11, 6 | 12, 3 |
| No. tRNAs | 88 | 88 | 88 | 89 |
| No. noncoding RNAs | 4 | 4 | 4 | 4 |
| No. pseudogenes | 268 | 195 | 270 | 202 |
| Ambiguous residues | 0 | 0 | 0 | 0 |
| Frameshifted | 39 | 37 | 40 | 37 |
| Incomplete | 220 | 144 | 221 | 152 |
| Internal stop | 20 | 25 | 22 | 23 |
| Multiple problems | 11 | 11 | 13 | 10 |
| No. predicted prophages | 5 | 2 | 5 | 2 |
| Intact | 2 | 0 | 1 | 0 |
| Incomplete | 3 | 1 | 4 | 2 |
| Questionable | 0 | 1 | 0 | 0 |
| No. plasmids | ND | ND | ND | ND |
| Antibiotic resistance | ||||
| β-lactam† | blaVCC-1 (100%) | blaVCC-1 (100%) | blaVCC-1 (100%) | blaVCC-1 (100%) |
| MLST type | ST336 | ST336 | ST336 | ST336 |
| GenBank information | ||||
| Bioproject no. | PRJNA331077 | PRJNA331078 | PRJNA331079 | PRJNA331080 |
| Biosample no. | SAMN05437226 | SAMN0537225 | SAMN0537224 | SAMN0537223 |
| Accession no. | MCBB00000000 | MCBA00000000 | MCAZ00000000 | MCAY00000000 |
*In silico analyses were conducted by using the services of the NCB Prokaryotic Genome Annotation Pipeline (https://www.ncbi.nlm.nih.gov/genome/annotation_prok/), the Center for Genomic Epidemiology (http://.genomicepidemiology.org), and PHAST (http://www.phast.wishartlab.com/).CDS, coding DNA sequence; MLST, multilocus sequencing typing; ND, not determined; ST, sequence type. †Percentage values indicate level of nucleotide similarity against the reference gene (GenBank accession no. KT818596).