Table 1.

Summary of the sequence assembly after Illumina deep sequencing.

Sample name	Raw Reads	Clean reads	Clean bases	Error rate (%)	Q20 (%)	Q30 (%)	GC (%)
BLM_S1-L	29,731,089	29,186,255	3.65G	0.04	94.62	89.61	49.70
BLM_S1-R	29,731,089	29,186,255	3.65G	0.05	92.65	86.93	49.74
BLM_S2-L	29,899,925	29,305,424	3.66G	0.04	94.72	89.82	49.25
BLM_S2-R	29,899,925	29,305,424	3.66G	0.05	92.75	87.11	49.31
BLM_S3-L	27,111,752	26,647,695	3.33G	0.04	94.63	89.63	49.78
BLM_S3-R	27,111,752	26,647,695	3.33G	0.05	92.29	86.41	49.82
WHM_S1-L	28,796,205	28,215,855	3.53G	0.04	94.95	90.21	49.80
WHM_S1-R	28,796,205	28,215,855	3.53G	0.04	93.28	87.96	49.86
WHM_S2-L	28,913,848	28,344,875	3.54G	0.04	94.98	90.25	49.66
WHM_S2-R	28,913,848	28,344,875	3.54G	0.04	93.59	88.45	49.70
WHM_S3-L	34,228,559	33,512,195	4.19G	0.04	94.74	89.83	49.83
WHM_S3-R	34,228,559	33,512,195	4.19G	0.05	92.73	87.05	49.89
BLM_S-Summary	173,485,532	170,278,748	21.28G	0.045	93.63	88.25	49.60
WHM_S-Summary	183,877,224	180,145,850	22.52G	0.042	94.05	88.96	49.79
Summary	357,362,756	350,424,598	43.80G				49.70

L: Reads sequencing from the left; R: Reads sequencing from the right; Q20: The percentage of bases with a Phred value > 20; Q30: The percentage of bases with a Phred value > 30.