Table 2. Top-ranked results from the meta-analysis of SNP-based associations for facet-level traits of neuroticism.
Facet | SNP | Chr | Position | Effect allele | MAF | Z-score | P-value | Directiona | HetChiSq | HetPval | Nearest Geneb |
---|---|---|---|---|---|---|---|---|---|---|---|
N1 | rs78773901 | 2 | 188731477 | C | 0.027 | −4.665 | 3.09E-06 | −− | 3.571 | 0.168 | . |
rs4685767 | 3 | 4613530 | G | 0.361 | 4.506 | 6.59E-06 | +++ | 0.404 | 0.817 | ITPR1 | |
rs2700687 | 7 | 33666459 | A | 0.362 | −4.493 | 7.03E-06 | −− | 0.819 | 0.664 | BBS9 | |
rs9316411 | 13 | 49321854 | G | 0.079 | −4.445 | 8.78E-06 | −− | 3.469 | 0.177 | CYSLTR2 | |
rs10970114 | 9 | 31116845 | A | 0.221 | −4.424 | 9.70E-06 | −− | 0.877 | 0.645 | . | |
N2 | rs1360001 | 9 | 78259530 | T | 0.168 | 5.878 | 4.14E-09 | +++ | 4.434 | 0.109 | MIR548H3 |
rs74627388 | 3 | 13888606 | T | 0.113 | 4.841 | 1.29E-06 | +++ | 0.822 | 0.663 | WNT7A | |
rs75400032 | 2 | 35295043 | A | 0.192 | 4.718 | 2.38E-06 | +++ | 0.325 | 0.850 | . | |
rs117920056 | 5 | 149128924 | T | 0.024 | 4.683 | 2.83E-06 | +++ | 0.111 | 0.946 | PPARGC1B | |
rs12187180 | 5 | 20815506 | G | 0.286 | 4.524 | 6.08E-06 | +++ | 0.572 | 0.751 | . | |
N3 | rs2929855 | 5 | 44390364 | A | 0.133 | −4.591 | 4.41E-06 | −− | 4.919 | 0.085 | FGF10 |
rs1007107 | 6 | 14463419 | G | 0.389 | 4.515 | 6.32E-06 | +++ | 0.648 | 0.723 | . | |
rs11242622 | 5 | 106373992 | T | 0.308 | −4.501 | 6.75E-06 | −− | 1.614 | 0.446 | LOC102467213 | |
rs10151594 | 14 | 51864477 | A | 0.099 | −4.491 | 7.08E-06 | −− | 0.044 | 0.978 | LINC00640 | |
rs17257269 | 3 | 60025505 | C | 0.025 | 4.485 | 7.29E-06 | +++ | 0.879 | 0.644 | FHIT | |
N4 | rs308254 | 13 | 93672943 | T | 0.287 | −4.822 | 1.43E-06 | −− | 1.283 | 0.527 | . |
rs79425212 | 6 | 30813282 | A | 0.203 | 4.811 | 1.51E-06 | +++ | 3.195 | 0.202 | DDR1 | |
rs145239798 | 2 | 188754537 | A | 0.026 | −4.736 | 2.18E-06 | −− | 2.235 | 0.327 | . | |
rs11691878 | 2 | 22021330 | C | 0.166 | −4.656 | 3.22E-06 | −− | 0.036 | 0.982 | LOC645949 | |
rs75769602 | 13 | 61788256 | C | 0.051 | 4.603 | 4.16E-06 | +++ | 1.758 | 0.415 | MIR3169 | |
N5 | rs114649649 | 1 | 201299361 | A | 0.063 | −4.896 | 9.79E-07 | −− | 1.589 | 0.452 | PKP1 |
rs12494147 | 3 | 11668983 | T | 0.060 | 4.663 | 3.11E-06 | +++ | 1.567 | 0.457 | VGLL4 | |
rs7967431 | 12 | 82342828 | C | 0.415 | −4.636 | 3.55E-06 | −− | 7.932 | 0.019 | LOC101928449 | |
rs4569911 | 5 | 160235125 | T | 0.469 | −4.562 | 5.06E-06 | −− | 0.059 | 0.971 | ATP10B | |
rs1093307 | 12 | 117925643 | T | 0.190 | 4.498 | 6.86E-06 | +++ | 0.260 | 0.878 | KSR2 | |
N6 | rs2784611 | 9 | 10551203 | A | 0.442 | 4.521 | 6.17E-06 | +++ | 1.031 | 0.597 | PTPRD |
rs17495034 | 1 | 222181354 | C | 0.138 | 4.459 | 8.22E-06 | +++ | 2.229 | 0.328 | . | |
rs12944395 | 17 | 28323499 | G | 0.395 | 4.414 | 1.02E-05 | +++ | 0.498 | 0.780 | EFCAB5 | |
rs183360621 | 2 | 36464282 | A | 0.015 | 4.412 | 1.03E-05 | +++ | 0.151 | 0.928 | . | |
rs58450504 | 3 | 72555840 | G | 0.174 | −4.379 | 1.19E-05 | −− | 0.752 | 0.687 | RYBP |
Abbreviations: Chr, chromosome; HetChiSq, heterogeneity chi-square statistic; HetPval, heterogeneity P-value; MAF, minor allele frequency; N1, anxiety; N2, angry hostility; N3, depression; N4, self-consciousness; N5, impulsivity; N6, vulnerability; SNP, single-nucleotide polymorphism.
Direction is described the SNP beta-coefficient from Ansan Ansung, Kangbuk Samsung and Young Women cohort in sequence.
Nearest genes are defined as the closest genes to the SNP within signal boundary or the closest genes within a 100 kb window.