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. 2017 Jun 15;62(10):903–909. doi: 10.1038/jhg.2017.61

Table 2. Top-ranked results from the meta-analysis of SNP-based associations for facet-level traits of neuroticism.

Facet SNP Chr Position Effect allele MAF Z-score P-value Directiona HetChiSq HetPval Nearest Geneb
N1 rs78773901 2 188731477 C 0.027 −4.665 3.09E-06 −− 3.571 0.168 .
  rs4685767 3 4613530 G 0.361 4.506 6.59E-06 +++ 0.404 0.817 ITPR1
  rs2700687 7 33666459 A 0.362 −4.493 7.03E-06 −− 0.819 0.664 BBS9
  rs9316411 13 49321854 G 0.079 −4.445 8.78E-06 −− 3.469 0.177 CYSLTR2
  rs10970114 9 31116845 A 0.221 −4.424 9.70E-06 −− 0.877 0.645 .
N2 rs1360001 9 78259530 T 0.168 5.878 4.14E-09 +++ 4.434 0.109 MIR548H3
  rs74627388 3 13888606 T 0.113 4.841 1.29E-06 +++ 0.822 0.663 WNT7A
  rs75400032 2 35295043 A 0.192 4.718 2.38E-06 +++ 0.325 0.850 .
  rs117920056 5 149128924 T 0.024 4.683 2.83E-06 +++ 0.111 0.946 PPARGC1B
  rs12187180 5 20815506 G 0.286 4.524 6.08E-06 +++ 0.572 0.751 .
N3 rs2929855 5 44390364 A 0.133 −4.591 4.41E-06 −− 4.919 0.085 FGF10
  rs1007107 6 14463419 G 0.389 4.515 6.32E-06 +++ 0.648 0.723 .
  rs11242622 5 106373992 T 0.308 −4.501 6.75E-06 −− 1.614 0.446 LOC102467213
  rs10151594 14 51864477 A 0.099 −4.491 7.08E-06 −− 0.044 0.978 LINC00640
  rs17257269 3 60025505 C 0.025 4.485 7.29E-06 +++ 0.879 0.644 FHIT
N4 rs308254 13 93672943 T 0.287 −4.822 1.43E-06 −− 1.283 0.527 .
  rs79425212 6 30813282 A 0.203 4.811 1.51E-06 +++ 3.195 0.202 DDR1
  rs145239798 2 188754537 A 0.026 −4.736 2.18E-06 −− 2.235 0.327 .
  rs11691878 2 22021330 C 0.166 −4.656 3.22E-06 −− 0.036 0.982 LOC645949
  rs75769602 13 61788256 C 0.051 4.603 4.16E-06 +++ 1.758 0.415 MIR3169
N5 rs114649649 1 201299361 A 0.063 −4.896 9.79E-07 −− 1.589 0.452 PKP1
  rs12494147 3 11668983 T 0.060 4.663 3.11E-06 +++ 1.567 0.457 VGLL4
  rs7967431 12 82342828 C 0.415 −4.636 3.55E-06 −− 7.932 0.019 LOC101928449
  rs4569911 5 160235125 T 0.469 −4.562 5.06E-06 −− 0.059 0.971 ATP10B
  rs1093307 12 117925643 T 0.190 4.498 6.86E-06 +++ 0.260 0.878 KSR2
N6 rs2784611 9 10551203 A 0.442 4.521 6.17E-06 +++ 1.031 0.597 PTPRD
  rs17495034 1 222181354 C 0.138 4.459 8.22E-06 +++ 2.229 0.328 .
  rs12944395 17 28323499 G 0.395 4.414 1.02E-05 +++ 0.498 0.780 EFCAB5
  rs183360621 2 36464282 A 0.015 4.412 1.03E-05 +++ 0.151 0.928 .
  rs58450504 3 72555840 G 0.174 −4.379 1.19E-05 −− 0.752 0.687 RYBP

Abbreviations: Chr, chromosome; HetChiSq, heterogeneity chi-square statistic; HetPval, heterogeneity P-value; MAF, minor allele frequency; N1, anxiety; N2, angry hostility; N3, depression; N4, self-consciousness; N5, impulsivity; N6, vulnerability; SNP, single-nucleotide polymorphism.

a

Direction is described the SNP beta-coefficient from Ansan Ansung, Kangbuk Samsung and Young Women cohort in sequence.

b

Nearest genes are defined as the closest genes to the SNP within signal boundary or the closest genes within a 100 kb window.