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. 2017 Sep 29;18:430. doi: 10.1186/s12859-017-1848-9

Table 2.

Performance rates for three different ML approaches: mean (sd)

Feature set AUC Accuracy Sensitivity Specificity F-measure MCC
TRAINING SET
RF
Primary 1.0000 (0) 0.8957 (0.0480) 1 (0) 0.8807 (0.0546) 0.7176 (0.0938) 0.7054 (0.0920)
Tertiary 0.9996 (0.0003) 0.8316 (0.0591) 1 (0) 0.8074 (0.0674) 0.6096 (0.0898) 0.5977 (0.0882)
Whole 1.0000 (0) 0.8948 (0.0533) 1 (0) 0.8797 (0.0609) 0.7192 (0.1053) 0.7071 (0.1046)
mRMR 1.0000 (0) 0.8932 (0.0480) 1 (0) 0.8777 (0.0550) 0.7138 (0.0966) 0.7015 (0.0960)
SVM
Primary 0.9997 (0.0011) 0.9069 (0.1990) 0.9990 (0.0034) 0.8939 (0.2270) 0.8751 (0.2584) 0.8670 (0.2747)
Tertiary 0.9924 (0.0090) 0.7425 (0.1501) 0.9865 (0.0217) 0.7077 (0.1729) 0.5562 (0.2335) 0.5390 (0.2407)
Whole 0.9992 (0.0025) 0.9310 (0.1542) 0.9980 (0.0058) 0.9210 (0.1772) 0.8936 (0.2254) 0.8874 (0.2370)
mRMR 0.9995 (0.0018) 0.9044 (0.1766) 0.9982 (0.0043) 0.8907 (0.2026) 0.8545 (0.2561) 0.8463 (0.2690)
NN
Primary 0.9482 (0.0339) 0.7248 (0.1607) 0.9377 (0.0416) 0.6938 (0.1841) 0.5195 (0.1975) 0.4835 (0.2133)
Tertiary 0.9336 (0.0227) 0.7552 (0.1040) 0.9079 (0.0322) 0.7334 (0.1195) 0.5082 (0.1322) 0.4706 (0.1378)
Whole 0.9616 (0.0247) 0.8273 (0.1170) 0.9491 (0.0327) 0.8098 (0.1333) 0.6292 (0.1883) 0.6063 (0.1958)
mRMR 0.9533 (0.0232) 0.7897 (0.1160) 0.9373 (0.0314) 0.7684 (0.1325) 0.5696 (0.1738) 0.5413 (0.1822)
TESTING SET
RF
Primary 0.6947 (0.0416) 0.6207 (0.0666) 0.6737 (0.1296) 0.6139 (0.0883) 0.3026 (0.0439) 0.1936 (0.0573)
Tertiary 0.7614 (0.0375) 0.6975 (0.0485) 0.7064 (0.1029) 0.6959 (0.0633) 0.3638 (0.0463) 0.2781 (0.0547)
Whole 0.7957 (0.0355) 0.7458 (0.0622) 0.6849 (0.1195) 0.7540 (0.0813) 0.4003 (0.0563) 0.3205 (0.0625)
mRMR 0.7998 (0.0334) 0.7468 (0.0567) 0.6817 (0.0982) 0.7557 (0.0721) 0.4003 (0.0562) 0.3190 (0.0622)
SVM
Primary 0.5660 (0.0431) 0.5604 (0.0847) 0.5383 (0.1381) 0.5641 (0.1112) 0.2286 (0.0414) 0.0688 (0.0573)
Tertiary 0.6480 (0.0534) 0.6434 (0.0825) 0.5500 (0.1329) 0.6561 (0.1070) 0.2741 (0.0459) 0.1437 (0.0605)
Whole 0.6753 (0.0424) 0.6441 (0.0704) 0.6037 (0.1301) 0.6501 (0.0954) 0.2924 (0.0417) 0.1744 (0.0498)
mRMR 0.6700 (0.0450) 0.6348 (0.0802) 0.5986 (0.1309) 0.6398 (0.1047) 0.2865 (0.0461) 0.1641 (0.0585)
NN
Primary 0.5601 (0.0479) 0.5477 (0.0907) 0.5465 (0.1349) 0.5474 (0.1178) 0.2274 (0.0411) 0.0637 (0.0567)
Tertiary 0.6887 (0.0470) 0.6662 (0.0687) 0.5998 (0.1412) 0.6745 (0.0907) 0.3047 (0.0523) 0.1907 (0.0658)
Whole 0.6846 (0.0469) 0.6650 (0.0680) 0.5793 (0.1194) 0.6765 (0.0886) 0.2981 (0.0453) 0.1791 (0.0581)
mRMR 0.6903 (0.0486) 0.6573 (0.0696) 0.6101 (0.1224) 0.6640 (0.0903) 0.3044 (0.0474) 0.1900 (0.0627)