Table 1.

RNA-seq data statistics.

Samplesa	Raw reads	Clean readsb	Clean basesc	Q20 (%)d	Q30 (%)e	Multiple mapped (%)f	Uniquely mapped (%)g
TB1	22972274	21089902	3.16G	96.93	92.14	4.13	91.47
TB2	22982320	21042592	3.16G	96.85	91.97	4.23	91.29
TB3	27939654	25571816	3.84G	96.86	92.04	4.32	91.48
TF1	17048238	15773838	2.37G	98.19	94.95	1.91	95.45
TF2	21089418	19873194	2.98G	98.13	94.83	2.19	94.67
TF3	18183276	17000320	2.55G	98.24	95.09	2.06	95.21
aTF1	19823808	19034174	2.86G	98.15	94.88	2.44	90.72
aTF2	14603550	14014400	2.1G	98.15	94.86	2.15	90.62
aTF3	14113492	13548724	2.03G	98.21	95.02	2.22	90.75
aTB1	13672844	13538222	2.03G	97.67	93.59	3.28	92.82
aTB2	15780488	15643318	2.35G	98.34	95.3	3.23	92.88
aTB3	16476102	16356060	2.45G	98.32	95.24	3.1	92.89

^a1, 2, and 3 represent three independent biological replicates.

^bReads from sequencing after filtering low-quality reads.

^cThe number of clean reads is multiplied by the length and converted to G.

^dQ20.

^eQ30 The percentage of bases with a Phred value >20 or 30.

^fThe percentages of multiple mapped reads accounting for the total mapped clean reads.

^gThe percentages of unique mapped reads accounting for the total mapped clean reads.