Table 1.
Analysis of chloroplast contamination and OTUs based on different read counts.
| Sample | Barcode | HQS | CCP % | OTUs | SRA |
|---|---|---|---|---|---|
| A1 | GTTTCG | 202797 | 90.25 | 284 | SRR5852956 |
| A2 | CGTACG | 152325 | 80.18 | 266 | SRR5852952 |
| A3 | GAGTGG | 167059 | 86.14 | 271 | SRR5852938 |
| B1 | GGTAGC | 39184 | 61.29 | 172 | SRR5852944 |
| B2 | ACTGAT | 161846 | 18.72 | 160 | SRR5852947 |
| B3 | ATGAGC | 137316 | 6.99 | 156 | SRR5852933 |
| C1 | ATTCGG | 75253 | 25.12 | 151 | SRR5852931 |
| C2 | CAAAAG | 119526 | 16.10 | 162 | SRR5858743 |
| C3 | CAACTA | 119719 | 9.74 | 150 | SRR5858747 |
| D1 | CACCGG | 151349 | 31.96 | 169 | SRR5858744 |
| D2 | CACGAT | 137164 | 5.90 | 154 | SRR5858746 |
| D3 | CACTCA | 149852 | 6.38 | 198 | SRR5858745 |
HQS, High-quality sequences produced from each sample. CCP, chloroplast contaminant percentage from 35000 High-quality sequences from each sample. OTUs, the operational taxonomic units produced from 7000 High-quality bacterial sequences. SRA, the accession numbers of sequence read archives deposited in NCBI.