FIGURE 2.

Quantity of MS/MS events obtained in TDA/DDA and DDA control method experiments. (A) Average numbers of MS/MS events per technical replicate in each batch of LC-MS/MS experiments conducted on sample 1 (left) and sample 2 (right); MS/MS events matching inclusion list m/z values are differentiated from those that do not; standard errors are shown for these two categories of MS/MS events. (B) Average percentages of MS/MS events matching inclusion list m/z values per technical replicate in each batch of LC-MS/MS experiments conducted on sample 1 (left) and sample 2 (right). Statistically significant differences between TDA/DDA and DDA control method experiments, as determined using 2-tailed t-tests, are labeled ^∗p < 0.05 or ^∗∗p < 0.01.